Gene Sfri_3714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3714 
Symbol 
ID4280607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4406509 
End bp4408413 
Gene Length1905 bp 
Protein Length634 aa 
Translation table11 
GC content47% 
IMG OID638136527 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_752380 
Protein GI114564866 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00250632 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATCTG AAAGAACTTT CCGCGAACTC GGCCTGTCTG AGTCTTTGTT GCGTTCGCTT 
GACGAGTTAG GTTATGAAAA CCCAACTCCT ATTCAAGCTG CTAGTATCGA CCCGCTTATG
GCTGGTAAAG ATATTATCGG TCAAGCACAA ACCGGTACCG GTAAAACAGG CGCGTTTGCC
CTGCCTTTAC TAAACAAAAT CGACATGAAA ATCAATGCTC CACAGATTTT AGTGTTAGCA
CCAACCCGCG AATTAGCGGT TCAAGTTGCC GAAGCATTTG GTAGTTATGC CAAATTCATG
AAAGGCTTCC ACGTACTACC GATTTACGGT GGTCAAAGCA TGCAACAACA ATTAAACGCC
CTTAAGCGTG GACCACAAGT CATTGTTGGT ACTCCTGGTC GTGTAATGGA TCACATGCGT
CGTGGCACAT TAAAGCTAGA TAATCTAAAA GCCTTAGTAT TAGACGAAGC CGATGAAATG
CTAAAAATGG GCTTCATCGA TGATATCGAA TGGGTATTAG AGCACAAGCC TGCTGACAGC
CAACTTGCAT TATTCTCTGC CACTATGCCT GAGCAAATTA AGCGCGTAGC AGCTAAGCAC
TTATCTAATC CAGTGAACAT CAGCATAGCG TCTAGCCAGA CAACTGTTGA GTCTATCGAC
CAACGTTATG TGCAAGTATC ACAACACAAC AAACTAGAAG CGTTAGTACG TGTTTTAGAA
GTTGAAAATA CTGAAGGTAT TATCATCTTC GTTCGTACCC GTAACAGCTG TGTTGAATTA
GCCGAAAAAT TAGAAGCCCG TGGTTATGCT TCATCTCCAT TACATGGAGA CATGAATCAA
CAAGCTCGTG AGCGTGCTGT TGAGCAGCTT AAGCGCGGCA AGTTAGACAT TTTAATCGCG
ACTGACGTTG CGGCACGTGG TCTTGACGTT GAACGTATTG GACACGTAGT AAACTACGAT
ATTCCTTATG ATTCAGAAGC CTATGTTCAC CGTATCGGTC GTACAGGTCG TGCTGGTCGT
ACTGGTATGG CAATCCTATT TGTAACCAAT CGTGAAATGC GCATGTTACG CACTATCGAA
CGCGCTACAA ACAGCCGTAT TTCGCCAATG AAAGTGCCTA GCCCTGAATC AGTTGCAGAG
CGTCGTTTAT CTCGTTTAGG CGAGCAAATC CAAGAAACCA TTAACGGCGA CTTAGATTTC
ATGAAAAATG CTGTAGCTGA ATTATGTCAA CAGCTTGAAG TTGATACCGA TTTACTAGCT
GCTGCGTTGC TACAACAAGT ACAACAAGAG CGTCCACTAC AGTTACCAAC TATTACCGAA
CGTCAACGTG ATTCACGTGA CGAGCGTAGT GATCGTGGTA GCGACCGTGG TGACCGCAAT
AGCAGCGACC GTCCACGTCG TGAACGCAGT GACCGTGGCG AGCGTAGTAG CCGTCCAGCA
CCAAATAGCT TTGGTGATGC AGAAGGCTTA AAAGATAACC CAGACGTTAA AATGAATCGT
TATGTTATCG ATGTAGGTCG TGAAAATGGT GTTGGTGTAG GTAACATCGT TGGCGCTATC
GCTAACGAAG CAAACATCGA CAGCCGTTTC ATTGGTCAAA TCCAATTGTT TGATCAAGTC
ACAACGGTTG ATTTACCAGA CGGAATGCCT AAAGACATCC TTTCACACCT AAGAAAAGTT
CGTGTGTGTG GTCGTCCTTT AAACATTCGT GAAGCGGGTG ATGAAGTGTT TGCTGACACG
ACTCGCGGCG CAGGCGCTCC ACGTCGCCCA CGTAGTGATC GTGCTCGTAG TGACCGTCCA
CGTACCGACC GCCCAGCGGG TGATCGTCCG GCTAGTGATC GTCCGGCTAG TGACCGCCCT
GCAAGTGCAG AACGTCGTCC ACGTAAGCCA CGTGACAACG GTTAA
 
Protein sequence
MSSERTFREL GLSESLLRSL DELGYENPTP IQAASIDPLM AGKDIIGQAQ TGTGKTGAFA 
LPLLNKIDMK INAPQILVLA PTRELAVQVA EAFGSYAKFM KGFHVLPIYG GQSMQQQLNA
LKRGPQVIVG TPGRVMDHMR RGTLKLDNLK ALVLDEADEM LKMGFIDDIE WVLEHKPADS
QLALFSATMP EQIKRVAAKH LSNPVNISIA SSQTTVESID QRYVQVSQHN KLEALVRVLE
VENTEGIIIF VRTRNSCVEL AEKLEARGYA SSPLHGDMNQ QARERAVEQL KRGKLDILIA
TDVAARGLDV ERIGHVVNYD IPYDSEAYVH RIGRTGRAGR TGMAILFVTN REMRMLRTIE
RATNSRISPM KVPSPESVAE RRLSRLGEQI QETINGDLDF MKNAVAELCQ QLEVDTDLLA
AALLQQVQQE RPLQLPTITE RQRDSRDERS DRGSDRGDRN SSDRPRRERS DRGERSSRPA
PNSFGDAEGL KDNPDVKMNR YVIDVGRENG VGVGNIVGAI ANEANIDSRF IGQIQLFDQV
TTVDLPDGMP KDILSHLRKV RVCGRPLNIR EAGDEVFADT TRGAGAPRRP RSDRARSDRP
RTDRPAGDRP ASDRPASDRP ASAERRPRKP RDNG