Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3714 |
Symbol | |
ID | 4280607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4406509 |
End bp | 4408413 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638136527 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_752380 |
Protein GI | 114564866 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00250632 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATCTG AAAGAACTTT CCGCGAACTC GGCCTGTCTG AGTCTTTGTT GCGTTCGCTT GACGAGTTAG GTTATGAAAA CCCAACTCCT ATTCAAGCTG CTAGTATCGA CCCGCTTATG GCTGGTAAAG ATATTATCGG TCAAGCACAA ACCGGTACCG GTAAAACAGG CGCGTTTGCC CTGCCTTTAC TAAACAAAAT CGACATGAAA ATCAATGCTC CACAGATTTT AGTGTTAGCA CCAACCCGCG AATTAGCGGT TCAAGTTGCC GAAGCATTTG GTAGTTATGC CAAATTCATG AAAGGCTTCC ACGTACTACC GATTTACGGT GGTCAAAGCA TGCAACAACA ATTAAACGCC CTTAAGCGTG GACCACAAGT CATTGTTGGT ACTCCTGGTC GTGTAATGGA TCACATGCGT CGTGGCACAT TAAAGCTAGA TAATCTAAAA GCCTTAGTAT TAGACGAAGC CGATGAAATG CTAAAAATGG GCTTCATCGA TGATATCGAA TGGGTATTAG AGCACAAGCC TGCTGACAGC CAACTTGCAT TATTCTCTGC CACTATGCCT GAGCAAATTA AGCGCGTAGC AGCTAAGCAC TTATCTAATC CAGTGAACAT CAGCATAGCG TCTAGCCAGA CAACTGTTGA GTCTATCGAC CAACGTTATG TGCAAGTATC ACAACACAAC AAACTAGAAG CGTTAGTACG TGTTTTAGAA GTTGAAAATA CTGAAGGTAT TATCATCTTC GTTCGTACCC GTAACAGCTG TGTTGAATTA GCCGAAAAAT TAGAAGCCCG TGGTTATGCT TCATCTCCAT TACATGGAGA CATGAATCAA CAAGCTCGTG AGCGTGCTGT TGAGCAGCTT AAGCGCGGCA AGTTAGACAT TTTAATCGCG ACTGACGTTG CGGCACGTGG TCTTGACGTT GAACGTATTG GACACGTAGT AAACTACGAT ATTCCTTATG ATTCAGAAGC CTATGTTCAC CGTATCGGTC GTACAGGTCG TGCTGGTCGT ACTGGTATGG CAATCCTATT TGTAACCAAT CGTGAAATGC GCATGTTACG CACTATCGAA CGCGCTACAA ACAGCCGTAT TTCGCCAATG AAAGTGCCTA GCCCTGAATC AGTTGCAGAG CGTCGTTTAT CTCGTTTAGG CGAGCAAATC CAAGAAACCA TTAACGGCGA CTTAGATTTC ATGAAAAATG CTGTAGCTGA ATTATGTCAA CAGCTTGAAG TTGATACCGA TTTACTAGCT GCTGCGTTGC TACAACAAGT ACAACAAGAG CGTCCACTAC AGTTACCAAC TATTACCGAA CGTCAACGTG ATTCACGTGA CGAGCGTAGT GATCGTGGTA GCGACCGTGG TGACCGCAAT AGCAGCGACC GTCCACGTCG TGAACGCAGT GACCGTGGCG AGCGTAGTAG CCGTCCAGCA CCAAATAGCT TTGGTGATGC AGAAGGCTTA AAAGATAACC CAGACGTTAA AATGAATCGT TATGTTATCG ATGTAGGTCG TGAAAATGGT GTTGGTGTAG GTAACATCGT TGGCGCTATC GCTAACGAAG CAAACATCGA CAGCCGTTTC ATTGGTCAAA TCCAATTGTT TGATCAAGTC ACAACGGTTG ATTTACCAGA CGGAATGCCT AAAGACATCC TTTCACACCT AAGAAAAGTT CGTGTGTGTG GTCGTCCTTT AAACATTCGT GAAGCGGGTG ATGAAGTGTT TGCTGACACG ACTCGCGGCG CAGGCGCTCC ACGTCGCCCA CGTAGTGATC GTGCTCGTAG TGACCGTCCA CGTACCGACC GCCCAGCGGG TGATCGTCCG GCTAGTGATC GTCCGGCTAG TGACCGCCCT GCAAGTGCAG AACGTCGTCC ACGTAAGCCA CGTGACAACG GTTAA
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Protein sequence | MSSERTFREL GLSESLLRSL DELGYENPTP IQAASIDPLM AGKDIIGQAQ TGTGKTGAFA LPLLNKIDMK INAPQILVLA PTRELAVQVA EAFGSYAKFM KGFHVLPIYG GQSMQQQLNA LKRGPQVIVG TPGRVMDHMR RGTLKLDNLK ALVLDEADEM LKMGFIDDIE WVLEHKPADS QLALFSATMP EQIKRVAAKH LSNPVNISIA SSQTTVESID QRYVQVSQHN KLEALVRVLE VENTEGIIIF VRTRNSCVEL AEKLEARGYA SSPLHGDMNQ QARERAVEQL KRGKLDILIA TDVAARGLDV ERIGHVVNYD IPYDSEAYVH RIGRTGRAGR TGMAILFVTN REMRMLRTIE RATNSRISPM KVPSPESVAE RRLSRLGEQI QETINGDLDF MKNAVAELCQ QLEVDTDLLA AALLQQVQQE RPLQLPTITE RQRDSRDERS DRGSDRGDRN SSDRPRRERS DRGERSSRPA PNSFGDAEGL KDNPDVKMNR YVIDVGRENG VGVGNIVGAI ANEANIDSRF IGQIQLFDQV TTVDLPDGMP KDILSHLRKV RVCGRPLNIR EAGDEVFADT TRGAGAPRRP RSDRARSDRP RTDRPAGDRP ASDRPASDRP ASAERRPRKP RDNG
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