Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1173 |
Symbol | |
ID | 4278441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1381888 |
End bp | 1383333 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638133948 |
Product | flagellin domain-containing protein |
Protein accession | YP_749864 |
Protein GI | 114562351 |
COG category | [N] Cell motility |
COG ID | [COG1344] Flagellin and related hook-associated proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000144043 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTATTT CAGTAAATAC TAACGTCACG TCAATGAAAG CGCAGGGCAA TTTAAATAAA GCTCAAAGCA ACACAGCTAC TTCAATGGAG CGTTTATCTT CAGGCTTACG CATTAACAGT GCAAAAGATG ATGCAGCTGG TTTACAGATA TCGAATCGTA TGACCAGCCA GATTAACGGT ATTGGCGTCG CCATGCGTAA CGCTAACGAC GGTATCTCGA TTGCGCAAAC CGCTGAAGGT GCATTGAGTG AATCGACAAA TATTTTGCAG CGTATGCGTG ATTTATCGTT GCAATCTGCC AACGGTTCAA ACTCTTCAAG TGATCGAGCA TCAATGCAAA CAGAAATTGA TGCATTGAGC GAGGAATTAA CGCGTATTGC TGATACGACC GCTTTTGGTG GGCAGAAACT GTTAGACGGT TCTTATGGTA GTCAAGCATT TCAAGTGGGC TCTGACGCAA ATCAAACAAT TAGTATTAGT TTACGTAGTA GTGCTGCCGA AAATATCGGT GGTCAGAAAA TTACAGGTGC AGGCACAGCA GCTGGTACGA CGGCGTTAAC CACTGGTGCA CCAGCGTTTG GCGCGGGTAC GTTAACCATT ACCAATGATG CTACTGGCCA GGCTGGTTTA GTTTCGGCTG CTGTTACTGA CACTGCAAAC ACTTACGCTA GTAAAATTAA TGCACTAGAA GGAACAACAG GTGTTAGCGC GCGGGCCCAT ACTGAAATCG AGATTACTTC AGACTATGCA GCAGCCCTAA CAGGTGGCAC TATAGGCAGT TCCCGTACTG GCGCACCTAC AACAGATATT TCTAGTGTAA CGTCAGCGCA GGGCTTAGTG GATACAATTA ATGCTGATAG TTCGAACACA GGATTAACGG CAAAGTTAGA TGCTGAAAGT GGCAACGTTC GTATCGCTTC GTTGGACGGA GACAATATAA CAACGACACA GGTTGGAGGC GCGACTTTCA CCATTGATTC TGTTGTAAAT GGTGTAGCTG ATGGAGCCGC TATAGATGCT GCAGTAGCAG CAGGTACAAC TTCATTGGGT GCGATAGAGC TAACGTCAAC AAGTTCTTTT TCTATGGTAG AGAGTGCTGT TACGGGGGCG TTCAATGGTC TGACTTCTAG TGACGATCTT GTAAGTTCAA TTGATATCAC CACAGCATCG GGTGCTCAAA GTGCAATATC GGCGATTGAT GGAGCGATTG CGACGATTGA CTCACAGCGC GCAGATTTAG GTGCGGTGCA AAATCGTATG GACTTTACCA TTAGCAATTT GAGCAATATT CAAAATAACG TTACCGATGC GCGTAGCCGT ATTCAGGATG TTGACTTTGC TGCAGAGAGT GCAACGCTAA GTAAGCAGCA GATTCTATCG CAAGCATCAT CGGCTATGTT GGCGCAGGCT AATCAGTTAC CGCAGGTTGC ACTATCACTA CTATAA
|
Protein sequence | MAISVNTNVT SMKAQGNLNK AQSNTATSME RLSSGLRINS AKDDAAGLQI SNRMTSQING IGVAMRNAND GISIAQTAEG ALSESTNILQ RMRDLSLQSA NGSNSSSDRA SMQTEIDALS EELTRIADTT AFGGQKLLDG SYGSQAFQVG SDANQTISIS LRSSAAENIG GQKITGAGTA AGTTALTTGA PAFGAGTLTI TNDATGQAGL VSAAVTDTAN TYASKINALE GTTGVSARAH TEIEITSDYA AALTGGTIGS SRTGAPTTDI SSVTSAQGLV DTINADSSNT GLTAKLDAES GNVRIASLDG DNITTTQVGG ATFTIDSVVN GVADGAAIDA AVAAGTTSLG AIELTSTSSF SMVESAVTGA FNGLTSSDDL VSSIDITTAS GAQSAISAID GAIATIDSQR ADLGAVQNRM DFTISNLSNI QNNVTDARSR IQDVDFAAES ATLSKQQILS QASSAMLAQA NQLPQVALSL L
|
| |