Gene SeD_A0079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0079 
SymbolcaiA 
ID6875569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp85326 
End bp86468 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content52% 
IMG OID642783333 
Productcrotonobetainyl-CoA dehydrogenase 
Protein accessionYP_002214027 
Protein GI198243212 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0999313 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTCA ACTTAAATGA CGAACAGGAG CTGTTTGTCG CCGGTATTCG CGAACTGATG 
GCCAGTGAGA ACTGGGAAGC TTATTTTGCC GAGTGCGATC GTGACAGCGT CTACCCTGAG 
CGTTTTGTAA AAGCGCTGGC GGATATGGGT ATTGATAGCC TGCTGATCCC GGAAGAACAC 
GGCGGTCTGG AAGCGGGTTT TGTTACCGTC GCCGCCGTCT GGATGGAGCT GGGACGTCTT 
GGCGCGCCAA CTTACGTGTT GTACCAATTG CCGGGAGGTT TTAACACTTT CCTGCGTGAA 
GGAACTCAGG AGCAAATTGA TAAAATCATG GCGTTCCGGG GCACCGGTAA GCAGATGTGG 
AACTCTGCTA TCACCGAACC GGGAGCGGGA TCGGATGTTG GTAGTCTGAA AACCACTTAT 
ACACGCAAAA ATGGTAAGGT TTATCTTAAT GGCAGTAAGT GCTTTATCAC CAGTAGCGCC 
TATACCCCGT ACATCGTGGT CATGGCGAGA GACGGTGCAT CGCCGGATAA ACCGGTTTAC 
ACCGAGTGGT TTGTGGACAT GAGCAAAGCG GGTATCAAGG TCAACAAACT GGAGAAACTC 
GGTCTGCGCA TGGATAGCTG CTGTGAAATC ACCTTTGACG ACGTTGAACT GGACGAGAAA 
GACATGTTCG GTCGGGAAGG TAACGGCTTC AACCGCGTGA AAGAAGAGTT TGACCATGAA 
CGCTTCCTCG TCGCGCTGAC CAACTACGGT ACCGCAATGT GCGCTTTTGA AGACGCTGCG 
CGTTACGCGA ATCAGCGCGT GCAGTTTGGT GAAGCTATTG GCCGTTTCCA GCTGATTCAG 
GAGAAGTTTG CGCATATGGC GATCAAACTG AACTCCATGA AAAATATGCT GCTGGAAGCC 
GCGTGGAAAG CGGATAACGG CACGATTACC TCCGGCGACG CGGCAATGTG CAAATACTTC 
TGCGCCAACG CCGCGTTTGA AGTGGTAGAC ACCGCCATGC AGGTACTGGG AGGTGTTGGT 
ATCGCGGGCA ACCACCGCAT CACGCGTTTC TGGCGTGACC TGCGCGTTGA CCGTGTTTCT 
GGTGGTTCTG ATGAAATGCA GATCCTGACG TTGGGTCGTG CGGTACTTAA GCAATACCGC 
TAA
 
Protein sequence
MDFNLNDEQE LFVAGIRELM ASENWEAYFA ECDRDSVYPE RFVKALADMG IDSLLIPEEH 
GGLEAGFVTV AAVWMELGRL GAPTYVLYQL PGGFNTFLRE GTQEQIDKIM AFRGTGKQMW 
NSAITEPGAG SDVGSLKTTY TRKNGKVYLN GSKCFITSSA YTPYIVVMAR DGASPDKPVY 
TEWFVDMSKA GIKVNKLEKL GLRMDSCCEI TFDDVELDEK DMFGREGNGF NRVKEEFDHE 
RFLVALTNYG TAMCAFEDAA RYANQRVQFG EAIGRFQLIQ EKFAHMAIKL NSMKNMLLEA 
AWKADNGTIT SGDAAMCKYF CANAAFEVVD TAMQVLGGVG IAGNHRITRF WRDLRVDRVS 
GGSDEMQILT LGRAVLKQYR