| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2468 |
|---|
| Symbol | |
|---|
| ID | 4018968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2943237 |
|---|
| End bp | 2945159 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956496 |
|---|
| Product | ABC transporter ATPase component |
|---|
| Protein accession | YP_563471 |
|---|
| Protein GI | 91793820 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000565711 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCTGG TTCGTATTAA TAATGGCTCT TTAGCCTATG GTTACACCCC GTTACTGCAA
AATGCCGATT TCACCATAGA AGCGGGTGAA CGTGTGTGTA TTGTTGGCCG CAATGGTGCG
GGTAAGTCGA GCTTATTGAA AGTTTTGTCA AAAGACGTGT TGCTCGATGA CGGTGAATTT
AATATCGCAG GCGATGTTAC TGTTGCCCGT TTACAGCAAG ACCCTCCTAA GGCGGAAACC
GGTTCTGTTT ATTCCTACAT TGCAGCGGGT CTGCAGGAGA TAGGTGAAGC GTTAGAGCAA
TATCATCAAT TGTCTCATGA TGTGGCAGAA GCCTCCCCTG AGCAGATGGA GCGTATGCTC
AATAAAATGC AGCAATTGCA AGAAGTGCTG GATCATAATA ATGGTTGGTT ATTGGACTCA
CGCATTCAGC AAAACTGTGA ATTATTAGGT CTAGATCCAG ATAAGCCTCT GAGTGAACTG
TCTGGCGGTT GGCAACGTAA AGTGGCCTTG GCTCGCGCAC TTGTGAGTGA ACCACACTTA
TTGCTGCTCG ATGAGCCCAC CAACCATTTA GACATAGATA CCATTGAATG GTTAGAGCAA
TTCTTACTGA GCTACAAAGG CGCTATCGTG TTTATCAGTC ACGATAGGGG CTTTATTTCC
CGTATGGCGA CCCGCATTGT CGATTTAGAT CGCGGCGTGG TGACCTCATG GCCGGGCAAT
TATCAGATGT ACCTTGAAGG CAAAGCCGAG TGGATCCGTG TTGAAGCGGA AAAAAATGCC
CATTTTGATA AAAAGCTCGC CGAAGAAGAA GTGTGGATCC GCCAAGGCGT CAAAGCCCGT
CGTACCCGCA ATGAAGGCCG AGTTCGTGCG TTAAAAGCCC TGCGGGTTGA GCGTAGCGAA
CGATTGAATC GCATGGGCAA TGCCAAAATG GCGGTCAGTG ACACTGAGCG TTCAGGTAAG
CTAGTGTTCG ATGTGAATAT GCTCAACTAC AACCTGCCTG ACAAAAACTT GGTGAAAAAC
TTCAGCACTA CCGTAGTGCG TGGTGACCGT ATCGCGTTAA TCGGACCCAA TGGCTGCGGT
AAGTCCACCT TGATAAAACT CTTGATTGAA AAGCTTCAGC CTCAGTCTGG AGAAATCAAA
GTCGGCACTA AGCTTGAAGT GGCGTATTTC GATCAATATC GTGAAGCGTT AGATCCTGAA
AAAACCGTTG AAGAAAACGT GGGTGAAGGC AAGAGTACAG TCACAGTTAA TGGCCAAGAT
AGGCATATCT TAAGTTACTT ACAAGATTTC TTATTCTCAC CTATGCGTGC TCGCACCCCA
GTAAAAGCCT TGTCAGGTGG CGAGAAGAAC CGCCTATTAC TGGCGCGCTT ATTACTGCGT
CCTGCTAACT TAATTATTCT CGATGAACCG ACAAACGATC TTGATATTGA GACGTTAGAG
TTGTTAGAGT CCTTGCTGAC TGACTTTGAA GGCACCTTAC TTATTGTCAG CCATGACAGG
GCCTTTATCG ATAATACTGT GACCAGTAGC TGGTGGTTTG CCGGTAATGG CCACTGGAAT
GAATATGTGG GTGGTTATGA AGATGCGGTG TCTCAGGGCG CTAAATTTTA TTCTGAGGAA
CCTGTAGGGC AAAGCGTTGT CGAAACACAG GCAAAACCTG TGCAGATAAA AGCAGAGCCT
GCACCAGTTA AAGTCTCAGC GAAGAAACTG TCGTATAAGA TGCAGCGTGA ATTAGATGAA
TTGCCTAAGC AACTTGAAGC GTTAGAACAA GATATTGAAG CGCTTCAGGC TCAAATCGGA
AATGCTAATT TTTACAGTCA GAGCCAAGAT AACATTGAGC CAGTGCTGCA AGCCTTGGCC
GCAAAAGAAC AACAATTAGA AGTCAGCTTC GAGCGATGGG AAGAGCTGGA ATCGCTGAAG
TAA
|
|---|
| Protein sequence | MSLVRINNGS LAYGYTPLLQ NADFTIEAGE RVCIVGRNGA GKSSLLKVLS KDVLLDDGEF
NIAGDVTVAR LQQDPPKAET GSVYSYIAAG LQEIGEALEQ YHQLSHDVAE ASPEQMERML
NKMQQLQEVL DHNNGWLLDS RIQQNCELLG LDPDKPLSEL SGGWQRKVAL ARALVSEPHL
LLLDEPTNHL DIDTIEWLEQ FLLSYKGAIV FISHDRGFIS RMATRIVDLD RGVVTSWPGN
YQMYLEGKAE WIRVEAEKNA HFDKKLAEEE VWIRQGVKAR RTRNEGRVRA LKALRVERSE
RLNRMGNAKM AVSDTERSGK LVFDVNMLNY NLPDKNLVKN FSTTVVRGDR IALIGPNGCG
KSTLIKLLIE KLQPQSGEIK VGTKLEVAYF DQYREALDPE KTVEENVGEG KSTVTVNGQD
RHILSYLQDF LFSPMRARTP VKALSGGEKN RLLLARLLLR PANLIILDEP TNDLDIETLE
LLESLLTDFE GTLLIVSHDR AFIDNTVTSS WWFAGNGHWN EYVGGYEDAV SQGAKFYSEE
PVGQSVVETQ AKPVQIKAEP APVKVSAKKL SYKMQRELDE LPKQLEALEQ DIEALQAQIG
NANFYSQSQD NIEPVLQALA AKEQQLEVSF ERWEELESLK
|
|---|
| |