| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0917 |
|---|
| Symbol | ipk |
|---|
| ID | 4016823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1047463 |
|---|
| End bp | 1048317 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954907 |
|---|
| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|---|
| Protein accession | YP_561928 |
|---|
| Protein GI | 91792277 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCCC CAATTTCAAA GAGTTGGCCA GCTCCTGCTA AACTGAATCT GTTTTTGCAT
GTCACAGGCC AAAGAGACGA TGGTTATCAC GAGTTGCAAA CCTTGTTTCA ATTTATCGAT
CACTGCGACT ATTTAGACTT TCAAGTGAAT CTTTGCGGTG AAATTAAGCT GCACAGCGAA
TTATCCAAAG TTGTCGCTGA TAAAGATAAC TTAATTCTTC AAGCCGCAAA ATCCTTACAA
AAACACGCAG GTGTCACCCA AGGCGCCGAC ATTTGGCTGG AAAAATTATT GCCTATGGGC
GGTGGTTTAG GCGGCGGTTC GTCCGATGCG GCCACCACAT TAGTGGCCTT AAACGCCCTG
TGGAATATTA ATTACCATGT GGATATCCTG GCCGAAATCG GCCTCAAATT AGGCGCGGAT
GTCCCTGTTT TTATTCATGG TTTAGCTTCT TTTGCTGAGG GCGTTGGCGA ACAACTTAAG
CCGGTATTAC CGGCTGAGAA ATGGTACCTA GTACTAGTGC CCAATGTGCA TGTGTCGACT
CAAGCCATCT TCCAATCGCC CGAGTTAACC CGTAATACCC CAAAGCTTTC GTTAAGCAAT
TTAATGAGCC AACACTGGTC AAATGACTGT GAAAAACTCG TGATAGCGCA CTACCCTCAA
GTTGCCAATG CCTTAAGCTG GCTGGTAGAA TATGCGCCGT CAAGAATGAC CGGAACGGGC
GCATGCGTGT TCGGGGAATT TGAACAAGAA CAGCAAGCCT TAGCTGTTTT GGCAGAATTA
CCGCCGAACA TGACAGGTTT TGTTGCCAAA GGCATGAATA GATCGCCGTT GTTAGAGCGA
CTCGCTAACG CCTAA
|
|---|
| Protein sequence | MRPPISKSWP APAKLNLFLH VTGQRDDGYH ELQTLFQFID HCDYLDFQVN LCGEIKLHSE
LSKVVADKDN LILQAAKSLQ KHAGVTQGAD IWLEKLLPMG GGLGGGSSDA ATTLVALNAL
WNINYHVDIL AEIGLKLGAD VPVFIHGLAS FAEGVGEQLK PVLPAEKWYL VLVPNVHVST
QAIFQSPELT RNTPKLSLSN LMSQHWSNDC EKLVIAHYPQ VANALSWLVE YAPSRMTGTG
ACVFGEFEQE QQALAVLAEL PPNMTGFVAK GMNRSPLLER LANA
|
|---|
| |