Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1609 |
Symbol | clpX |
ID | 3965716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2068121 |
End bp | 2069416 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920691 |
Product | ATP-dependent protease ATP-binding subunit ClpX |
Protein accession | YP_527083 |
Protein GI | 90021256 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000000000578423 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGACC ATACTGGTGA CAACGAAGAC AACGGCAAGC TACTTTATTG CTCATTTTGC GGCAAGAGTC AGCATGAGGT GCGCAAGCTT ATTGCGGGGC CGTCTGTGTT CATATGTGAT GAATGTGTTG ATTTGTGTAA CGACATCATT CGCGAAGAGA TACAAGAGAG TACAACGGAG TCGACTGGCG ATAAACTGCC AACTCCACAA GAGATTTCTG AAACTTTAGA CGAATATGTG ATTGGCCAGA AGCAGGCCAA AAAGGTATTG GCCGTAGCGG TATACAACCA CTACAAGCGG CTGCGCGTTG GAGACAAGAA AAAGTCCAAA GACGATGTTG AGCTAGGAAA AAGTAATATT TTGCTAGTGG GGCCTACCGG TAGCGGTAAA ACGCTATTAG CGGAAACTCT AGCTCGCCTA TTGAATGTAC CTTTCACTAT CGCTGATGCA ACCACATTAA CCGAAGCGGG TTATGTGGGT GAAGATGTAG AAAACATCAT TCAAAAACTG TTGCAGAAGT GCGATTACGA TGTTGAAAAA GCGCAGCAGG GCATAGTCTA TATCGATGAA ATCGATAAGA TTTCAAGAAA GTCCGACAAC CCATCGATAA CGCGCGACGT GTCGGGTGAG GGTGTTCAGC AGGCATTACT CAAGTTAATC GAGGGTACTG TAGCGTCTGT GCCTCCTCAG GGTGGGCGTA AGCATCCGCA GCAAGAGTTT TTACAGGTAG ATACCGGTAA CATCTTGTTT ATCTGTGGTG GTGCATTTGC TGGCCTAGAT AAGGTTATTC GCGATCGTTC CGAAAAAGGC GGTATTGGGT TTAGTGCCGA GGTTAAGAGC AAAGATTCAG GCAAAAATGT AGGTGAAACC CTGCGTGAGC TAGAGCCGGA AGATTTGGTT CGCTACGGGC TTATTCCAGA GTTTGTTGGC CGCTTGCCGG TTATCGCTAC CTTGGACGAG CTAGATCAAG ATGCCCTTGT ACGCATTCTT AAAGAACCTA AAAACTCCCT TGTTAAGCAA TATAGCAAGT TGTTTGAAAT GGAAGGCTCT GAGGTAGATT TTAGGGATGA CGCCCTAGAA GCCGTTGCCA ACAAGGCTAT GGAGCGTAAA ACCGGTGCTC GTGGCTTGCG TTCAATTATG GAAAACGTAC TGTTAGATAC TATGTACAAG ATTCCTTCCG AGGAAAACGT AGTAAAAGTT GTTGTTGATG AGTCCGTTAT TAAAGGTGAA TCTGCTCCAT TATTGGTTTA CGGCAATAAC GATGCCGAAA CCGCTAAGGC TGTACCTGAG GAATGA
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Protein sequence | MSDHTGDNED NGKLLYCSFC GKSQHEVRKL IAGPSVFICD ECVDLCNDII REEIQESTTE STGDKLPTPQ EISETLDEYV IGQKQAKKVL AVAVYNHYKR LRVGDKKKSK DDVELGKSNI LLVGPTGSGK TLLAETLARL LNVPFTIADA TTLTEAGYVG EDVENIIQKL LQKCDYDVEK AQQGIVYIDE IDKISRKSDN PSITRDVSGE GVQQALLKLI EGTVASVPPQ GGRKHPQQEF LQVDTGNILF ICGGAFAGLD KVIRDRSEKG GIGFSAEVKS KDSGKNVGET LRELEPEDLV RYGLIPEFVG RLPVIATLDE LDQDALVRIL KEPKNSLVKQ YSKLFEMEGS EVDFRDDALE AVANKAMERK TGARGLRSIM ENVLLDTMYK IPSEENVVKV VVDESVIKGE SAPLLVYGNN DAETAKAVPE E
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