Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal_0988 |
Symbol | |
ID | 4843164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS155 |
Kingdom | Bacteria |
Replicon accession | NC_009052 |
Strand | - |
Start bp | 1133625 |
End bp | 1135349 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640118206 |
Product | pseudouridine synthase |
Protein accession | YP_001049381 |
Protein GI | 126173232 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCTTC AGCCTTCTTG CTTTACCTCT TTCACACAAG CCATTGATGC CTATGCCCTG CCGCAGCGTT TTACATTTCC TTTCTATTAC GAACCACATC CGCTGTGCGT GATTGCAGCC AACGAATTAC AACAACACCT TGAGACTCAA AGTGATTGGC AACATAACTT TGGCCTAACG GGTGAGTTAA CTGGCGCCAT TGGCAAGATG TTCGGGGTAC TACTGGTGCA AAATACACAG GGTGAAGTGG GCTATTTGTC GGCATTTTCG GGCAAGTTAG CCGAGCAAAA CCATTGGCCA CGCTTTGTTC CACCTGTGTT TGATATGCTG GCTAAGGACA ATTTTTTCCA CGCCGAAAAC CTGCAAATCA ATCAAATTAA CGAACAGCTA CTTACAGTAG AAAACCATCC CGACATTCCG AGGCTATCAA CCGAGCTAGA AACTGAACAA GCTCAAGCGC AAGCCGAACT TGCCGCCCAC AGACAAGTGA TGATCGATGG CCGCCAATCG CGCAAGGCGC AGCGTAATCA ACTCGCAGCC CAATTGGCTG CCAATCCGAC TGATGAGACC TTGCGTGAAA ACGCAATAAC TGAAGCAAAG CTCAGTCAAG AAAGCATCAA TGAAAAGAAT CAGTTAAGAG ATATTAAACG CTATTGGGAT GAACGTATTC ATGTCATCAG CCAAGCGCTA AGCCCACTGA CAGATGGGCG TGACGCGTTA CGACAACAGC GCAAACGGCT CTCGGCGGCG CTGCAGCAAA AGCTGTTTGA GCAGTATCGT TTTTTGAATA TTAAAGGCAC AGAAAAGAGC CTTAACGGCA TATTTAACGG TACGGTTGAG TTAACGCCAC CCGCAGGCTC GGGCGAATGT GCCGCGCCTA AGTTGTTACA TTACGCCTTT AAACATGGTC TTAAGCCATT AGCTATTGCC GAGTTTTGGT GGGGCGCGCC GCCAAAATCA GAAATCCGCC AGCATAAGCA GTTTTATCCT GCCTGTCTGC GAAAATGCCA ACCCATCTTG GGGCATATGC TCGAAGGGCT CGTGGTCGAT GACAACCCTC TGCTTACCAA CCCCGCCGAA GGCAAAACGC TATCTATCCT CTACCAGGAC GATGCGATGG CGATTGTAAA TAAACCCGCC GAGTTTTTAT CCGTGCCCGG CAAAGAAATT GAAGACTCAG TGTATTCGCG CATGCGCCAA ACCTTCCCCC ATGCCACAGG TCCGCTAATC GTCCACAGGC TCGATATGTC AACCTCGGGA TTAATGGTGA TCGCGCTGAC AAAAGATGCC CATAAACAGC TGCAAAAACA GTTTATCCAG CGCACTGTGA CTAAACGTTA TGTGGCACTT TTGGCGGGAA TGCCTGCGGT CATGGCAAAT ACGCAGGCGA CGGGTAACAT CTCTTTACCC TTGCGTGGCG ATTTAGACGA TAGACCGAGA CAACTCGTTT GCCACGAGTT TGGTAAAACT GCCGAAACCC ATTGGGAATT GAGCCAACTT GATGAAATGG CACGTACAGC CCGCGTGTAT CTGTATCCTA AAACAGGCAG AACCCATCAA CTCAGGGTTC ACTGCGCCCA CTCAGAGGGG CTAAATACCC CGATTGTCGG TGACGACCTC TACGGCACTC GTGCCAATCG ACTGCATCTG CATGCGGATT TATTGATGCT TCAGCATCCC GTTACCCGTG AACGGATGCG CTTTCAGGTC GATCCAGATT TTTGA
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Protein sequence | MQLQPSCFTS FTQAIDAYAL PQRFTFPFYY EPHPLCVIAA NELQQHLETQ SDWQHNFGLT GELTGAIGKM FGVLLVQNTQ GEVGYLSAFS GKLAEQNHWP RFVPPVFDML AKDNFFHAEN LQINQINEQL LTVENHPDIP RLSTELETEQ AQAQAELAAH RQVMIDGRQS RKAQRNQLAA QLAANPTDET LRENAITEAK LSQESINEKN QLRDIKRYWD ERIHVISQAL SPLTDGRDAL RQQRKRLSAA LQQKLFEQYR FLNIKGTEKS LNGIFNGTVE LTPPAGSGEC AAPKLLHYAF KHGLKPLAIA EFWWGAPPKS EIRQHKQFYP ACLRKCQPIL GHMLEGLVVD DNPLLTNPAE GKTLSILYQD DAMAIVNKPA EFLSVPGKEI EDSVYSRMRQ TFPHATGPLI VHRLDMSTSG LMVIALTKDA HKQLQKQFIQ RTVTKRYVAL LAGMPAVMAN TQATGNISLP LRGDLDDRPR QLVCHEFGKT AETHWELSQL DEMARTARVY LYPKTGRTHQ LRVHCAHSEG LNTPIVGDDL YGTRANRLHL HADLLMLQHP VTRERMRFQV DPDF
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