| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0514 |
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| Symbol | |
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| ID | 7088428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 586082 |
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| End bp | 586699 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643459441 |
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| Product | MSHA pilin protein MshB |
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| Protein accession | YP_002356471 |
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| Protein GI | 217971720 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00061527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAACTA AGCAAACAGG TTTCTCATTA ATAGAGCTTG TGATTGTGAT TGTGATTTTA
GGGCTACTCG CTGCAACCGC GATCCCACGA TTTTTAAATG TTACCGATGA TGCTGAAGAC
GCCAGTGTTG ACGGTGTCGC CGGTGGTTTA TCGACTGCCG TTAGCTTTGT ACGTTCGCAG
TGGGAAGTTG ATGGGCGCCA AAATAGCAGC GTGATCTTGG ATGGTACGTC AGTTTCGCTC
GATCCCCGTT TTGGTTATCC TACAGGGACT TCCGTGACGG ATGTGACTGC GATGACGGAT
GCGAGTTGCC AACAAGTATT TAATACTGTG CTGCAGAGCG CTCCTCGTAA TGTGCTCTAC
ACTCAAGATG CCCGTAATCA ACGTTATACC GTGCGTGTGA TTGATGGTGC AGGTGGTAGT
GCTAATTCGA TTACAGGCAC TGTCGTTACT GGTTTAGATT TATGTGTTTA TCACCAAGTG
GCTTCACTGG TGATAAATCA AACAACTGGC GTACCCACTC CTACACCGGA TTTATCAACA
GCTGGTGCGA AAGGAGTCGT GTATAACCCA GGTACAGGTA AAGTGCTAAG CTTTACCCAA
ACGCCATTTG TACCATAG
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| Protein sequence | MKTKQTGFSL IELVIVIVIL GLLAATAIPR FLNVTDDAED ASVDGVAGGL STAVSFVRSQ
WEVDGRQNSS VILDGTSVSL DPRFGYPTGT SVTDVTAMTD ASCQQVFNTV LQSAPRNVLY
TQDARNQRYT VRVIDGAGGS ANSITGTVVT GLDLCVYHQV ASLVINQTTG VPTPTPDLST
AGAKGVVYNP GTGKVLSFTQ TPFVP
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