Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1602 |
Symbol | |
ID | 4603854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1957061 |
End bp | 1958977 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780961 |
Product | ABC transporter ATPase component |
Protein accession | YP_927479 |
Protein GI | 119774739 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.52947 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCTTG TTCGTATCAC CAATGGCTCT TTGGCCTATG GCTATGTTCC TTTATTGAAA AACGCCGATC TCAGCATCGA AGCCGGCGAG CGAGTGTGTA TTGTGGGCCG TAACGGTGCC GGTAAGTCCA GCCTGCTCAA AATTCTGGAT GGCGAAGTTC ATCTGGACGA CGGCGAGCTG AACCTGGCAA CAGACGTGCG TATCAGCCGC TTGCAGCAAG ACCCACCAAA GGCGGAATCG GGCAGTGTTT ACAGCTACAT CTCCCAGGGC CTGAAAGAAG CCGGCGAAGT GCTTGAGCGC TACCATCAGC TGTCCCACGA CCTGGCCACC GCCGATGATA CAATGCAAGC GCGCATGCTC AAGGAAATGG AAACATTGCA GGCAAAGCTT GACCATTTGA ATGGCTGGCA ACTGGATACC CGAATTCAGG CCCACTGTGT ACGCCTTGGT CTGGACCCCG ATAAGCCGCT CAGCGAACTT TCCGGCGGTT GGCAGCGAAA AGTCGCCCTG GCCAGAGCGC TGGTGAGCGA GCCTGAGCTG TTGCTGCTCG ATGAGCCAAC CAACCATTTG GATATCGACA CCATCGAGTG GCTCGAGCAG TTTTTGCTGA GCTACAAGGG GGCCATCGTC TTTATCAGTC ACGACCGTGG CTTTATCAAT CGCATGGCGA CCCGAATACT GGATTTGGAC CGTGGCGTCG TCACATCCTG GCCCGGCACC TATCAGGCGT ATCTGGAAGG CAAGGCCGAA TGGCTCAGAC ACGAAGCTGA AGCCAACGCC CAGTTTGATA AAAAACTGGC AGAGGAGGAA GTGTGGATAC GTCAGGGTAT TAAGGCGCGG CGCACCCGTA ACGAAGGCAG GGTGAGGGCA CTTAAGGCGC TGCGTATGGA GCGCTCAGAG CGGCTCAATC GCCAGGGGAA CGTTCGCATG AACGTGGCCG AGGGCGAACG CAGTGGCAAG CTGGTATTTG ATGTAAGCGA GCTGAATTAC AACCTGGCGG ACAAAGATCT GGTGCGGGAT TTTTCGGTGA GCGTGATGCG CGGCGACCGA ATTGCACTGA TAGGTCCCAA TGGCTGCGGC AAGTCGACTC TCATTAAGCT GCTGATAGGC CAACTCGAGC CTCAGTCCGG TAACATCAAA ACCGGTACCA AACTGGAAGT TGCGTATTTT GACCAATACC GCGAAAACCT CGACGAAGAG AAAACCGTTG AAGAAAACGT GGGGGATGGC AAGCAGACGG TAACCGTCAA TGGCCGCGAT CGCCATATAC TGAGCTACCT GCAGGACTTT TTGTTTTCAC CAGCACGGGC CCGCACTCCG GTAAAAGCCC TCTCCGGTGG TGAGAAAAAC CGTCTGCTGC TGGCCAGGCT GCTGCTGCGT CCTGCCAACC TTATCATTCT CGATGAGCCC ACCAACGACC TGGACATCGA AACCCTGGAG CTGCTCGAGT CCATGTTGAC CGAATACGAT GGCACCCTGC TTATCGTGAG CCATGACAGG GCCTTTATCG ACAATACCGT CACCAGTAGC TGGTGGTTTA CCGGCAATGG CCGCTGGGCC GAATATGTGG GCGGTTATCA GGATGCTGTT GACCAGGGTG CACGATTCTA TACCGGAGCG GCGGAACCTG AAGGGCAAAA GAGTGTCCAA GCTCAGGCGC CTGTGGTAAA ACAGCAAGCT GATGTAAAAA CACAAAAGAA ACTCTCTTAT AAGTTGCAGC GGGAGCTGGA CAGCCTGCCT GAACTGATGG AAGCCCTTGA GGCCGAGATT GCGGCACTGC AACAGGAAGT GAATCAGCCG GAGTTTTATG CTCAGGCACA GGATACGGTT AACGCGCGGC TGGCATTGCT GGGCGAAAAA GAACAGCAAT TGGACGTTTA CTTCGAGCGT TGGGAAGAAC TCGAGTCAAT GAAGTAA
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Protein sequence | MSLVRITNGS LAYGYVPLLK NADLSIEAGE RVCIVGRNGA GKSSLLKILD GEVHLDDGEL NLATDVRISR LQQDPPKAES GSVYSYISQG LKEAGEVLER YHQLSHDLAT ADDTMQARML KEMETLQAKL DHLNGWQLDT RIQAHCVRLG LDPDKPLSEL SGGWQRKVAL ARALVSEPEL LLLDEPTNHL DIDTIEWLEQ FLLSYKGAIV FISHDRGFIN RMATRILDLD RGVVTSWPGT YQAYLEGKAE WLRHEAEANA QFDKKLAEEE VWIRQGIKAR RTRNEGRVRA LKALRMERSE RLNRQGNVRM NVAEGERSGK LVFDVSELNY NLADKDLVRD FSVSVMRGDR IALIGPNGCG KSTLIKLLIG QLEPQSGNIK TGTKLEVAYF DQYRENLDEE KTVEENVGDG KQTVTVNGRD RHILSYLQDF LFSPARARTP VKALSGGEKN RLLLARLLLR PANLIILDEP TNDLDIETLE LLESMLTEYD GTLLIVSHDR AFIDNTVTSS WWFTGNGRWA EYVGGYQDAV DQGARFYTGA AEPEGQKSVQ AQAPVVKQQA DVKTQKKLSY KLQRELDSLP ELMEALEAEI AALQQEVNQP EFYAQAQDTV NARLALLGEK EQQLDVYFER WEELESMK
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