| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1225 |
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| Symbol | clpX |
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| ID | 4603477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1507065 |
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| End bp | 1508342 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780575 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | YP_927102 |
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| Protein GI | 119774362 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0176023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTGAGA ACAAGACTGG TGATGGCGGC AAACTGCTGT ATTGCTCTTT CTGCGGAAAG
AGCCAGCACG AAGTGCGAAA GCTGATCGCC GGACCATCCG TGTACGTCTG CGACGAGTGT
GTTGAGTTGT GCAACGACAT TATTCGCGAA GAGATTAAAG AGATTTCGCC AAAGCGGGAT
CAGGACAAGC TGCCAACGCC TCACGAACTG AGAGCACACC TTGATGACTA CGTCATTGGC
CAGGAAAAGG CCAAGAAGGT GCTGTCGGTG GCAGTGTACA ACCACTATAA GCGCTTGCGT
AATGCTGGCC CCAAAGATGG GGTAGAGCTG GGTAAGAGTA ACATTCTGCT GATTGGTCCA
ACCGGTAGTG GTAAGACCCT GTTGGCTGAA ACGCTGGCGC GTTTCCTCAA TGTACCTTTC
ACCATGGCCG ACGCCACTAC GTTGACCGAA GCCGGTTATG TGGGTGAAGA CGTTGAGAAC
ATCATTCAAA AGCTGCTGCA AAAGTGCGAC TACGATGTGG AAAAGGCCCA GCGTGGCATC
GTCTACATCG ATGAAATCGA TAAAATCAGC CGCAAGTCCG ACAACCCCTC CATCACCCGT
GATGTGAGTG GTGAAGGCGT GCAGCAAGCG CTGCTGAAAC TTATTGAAGG GACCGTTGCT
GCCGTGCCGC CACAGGGTGG CCGTAAACAT CCGCAGCAGG AGTTTTTGCA GGTTGATACC
TCCAAGATCC TCTTTATCTG TGGTGGCGCT TTCGCCGGCC TCGAGAAGGT GATTGAGCAA
CGCACCCATA CCGGTAGCGG TATTGGTTTC GGTGCTCAAG TAAAGGGCAA GGAAGAAAAA
GAGAGTATGT CTGACATTCT CTCGCAGGTT GAGCCGGAAG ATCTGGTTAA ATACGGTCTT
ATCCCTGAGT TCATCGGTCG TTTGCCTGTA GTCGCTACCC TGGCAGAGCT GGATGAAGAC
GCACTTATCC AAATTCTGTC AGAGCCCAAG AACGCACTTA CCAAGCAATA TGCGGCCCTG
TTCGAGATGG AAAACGTTGA GCTTGAATTC CGTGAAGACG CCCTGAAGGC AATCGCTCAA
AAGGCCATGT CACGCAAGAC AGGTGCCCGT GGTCTGCGCT CGATTGTAGA AGGTATTCTG
CTGGATACCA TGTATGACTT GCCGTCCCAA CAGGGTGTGA GCAAGGCTGT GGTGGATGAG
TCCGTGGTGA AGGGCGAGTC TGCACCGATC CTGATTTACG AACAGACCGA ATCTCAGGCG
GCCAGCGGCG ACCAATAA
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| Protein sequence | MGENKTGDGG KLLYCSFCGK SQHEVRKLIA GPSVYVCDEC VELCNDIIRE EIKEISPKRD
QDKLPTPHEL RAHLDDYVIG QEKAKKVLSV AVYNHYKRLR NAGPKDGVEL GKSNILLIGP
TGSGKTLLAE TLARFLNVPF TMADATTLTE AGYVGEDVEN IIQKLLQKCD YDVEKAQRGI
VYIDEIDKIS RKSDNPSITR DVSGEGVQQA LLKLIEGTVA AVPPQGGRKH PQQEFLQVDT
SKILFICGGA FAGLEKVIEQ RTHTGSGIGF GAQVKGKEEK ESMSDILSQV EPEDLVKYGL
IPEFIGRLPV VATLAELDED ALIQILSEPK NALTKQYAAL FEMENVELEF REDALKAIAQ
KAMSRKTGAR GLRSIVEGIL LDTMYDLPSQ QGVSKAVVDE SVVKGESAPI LIYEQTESQA
ASGDQ
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