| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0089 |
|---|
| Symbol | |
|---|
| ID | 4602346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 100286 |
|---|
| End bp | 100822 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779401 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_925971 |
|---|
| Protein GI | 119773231 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3078] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00261813 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.179607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTA TCAAGAAGAC ACGTAAAGCT GGCGGAACAG CCCCCAAGCA GGCACCTCGC
ACCCCCAAGT CCGAGCGAGT GCCAACTTCA AAAAAACGCG ACACCGGTAA TAAGTCCGGT
AGCCGCCAGA ACCCAGGCAC CGAAAAGCAA GGTAACCGCA GTGGCAAGGG CAAACAGGAC
CCACGTCTTG GCAGTAAAAA GCCCGTGGCA TTGGAACTGG CGCCGCAAAC TCAGCCTCAG
GTGAAGGCTC CCAAGCCAAA ACAGCCAAAA CTAAGCGATG AGCAACTGCT GCTCAAACTC
GAAGAAGACC CACGTCTTAA CGAGCTGCTC GATCGCCTGG AAGAAGGCCG GGTCCTGGGC
GCCGAGGATC AGCGCTGGCT CGACGAGCAG TTATCCAAAA TTGAAGCCCT GATGGAAAAA
CTGGGTATCA CTGATATTGA CGAAGCTCAG GGCGAAGACA GCGATGACGA TGATGCCCTG
TTGGCCCGAT TCGAATCCGG CGCCGATGTG TTAAAGCAAT ACCAGGACAA AGACTGA
|
|---|
| Protein sequence | MTRIKKTRKA GGTAPKQAPR TPKSERVPTS KKRDTGNKSG SRQNPGTEKQ GNRSGKGKQD
PRLGSKKPVA LELAPQTQPQ VKAPKPKQPK LSDEQLLLKL EEDPRLNELL DRLEEGRVLG
AEDQRWLDEQ LSKIEALMEK LGITDIDEAQ GEDSDDDDAL LARFESGADV LKQYQDKD
|
|---|
| |