| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0086 |
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| Symbol | |
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| ID | 4602343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 96995 |
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| End bp | 98335 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779398 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_925968 |
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| Protein GI | 119773228 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.652683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.197179 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAGA AATACAACTA CAGCGGTCCC CGTTATACCT CTTATCCGAC GGCGCTGGAG
TTCAACGACG GCTTTACAGA GCAGGATTTG CTGAGTGCCA TTGAGCACAG CAAGAGCGAT
AAGTTGTCAC TTTATATTCA CATCCCCTTC TGTGCCAAGC TTTGTTATTA CTGCGGCTGC
AACAAGGTCA TCACCCGCCA CGCCCATAAG GCCGATCAGT ACATTGAGTA TCTGGCGAGT
GAAATCTTAA ACCGTGCCCC ACTGTTCAAG GGCTACACGG TTACTCAGAT GCACTGGGGC
GGTGGTACCC CTACTTTCCT GAGCCCTGAG CAAATTCTGC GGCTGACCAA GCTTTTAAAG
GACAACTTCA ACTTCGCCGA TGAAGGTGAA TTCTCCATTG AAGTTGACCC GCGCGAAATT
GAGCTGACCA TGCTCGACAC CCTCAAGGAA GCCGGTTTCA ACCGTATTTC TATTGGGGTG
CAGGACTTCA ACAAGCAGGT TCAGGAAGCG GTAAACCGTC CACAGGACGA GCAGTTTATT
TTCGACCTGA TTGGCAAGGC CAAGGCCATG GGCTTTGAGT CCACCAACGT GGATTTGATT
TACGGCCTGC CCCATCAGAC ACCGGAAACC TTCGCTGAAA CCATCCAGCG CATTCTGGAC
CTGTCGCCTG ACCGTCTGTC GGTGTTCAAC TACGCCCACC TGCCTGCGCG CTTTGCCGCC
CAGCGCAAGA TCAAGGACGA AGATCTGCCA TCACCGCAGC AGAAGCTGGA AATCCTGCAC
CAGACCATCG AGACCCTGGT GGACGCCGGA TATCAGTACA TCGGCATGGA TCACTTCGCC
AAGCCCGATG ACGAGCTGGC GCGCCTGCAA CGCGAAGGCA AGCTGCACCG CAACTTCCAA
GGCTATACTA CCCAGGAAGA ATGTGACCTG CTGGGTCTGG GTGTATCGTC CATCAGCCAG
ATTGGCGATT GCTACGCCCA AAACCAGAAA GATATCCGCC CATACTACGA AGCCATAGAC
GACCATGGCC ATGCGCTGTG GAAGGGTTGC AAACTGAACC ACGACGACGA AATCCGCCGG
GTGGTCATCA AGCAGCTGAT CTGTCATTTC GACCTGGATA TGGCTGTTAT CGATGAGAAG
TTTGGCTTCA CCTTCGAAGA CTACTTCGCT CAGGATTTGA AACTGCTGCA GACCTTTATC
GACGACAAGC TGGTGACCAT TGAGAACCGT CGTATTCATG TGTCTGATAC CGGCCGTCTG
CTTATCCGTA ATATCTGTAT GTGCTTTGAC GTGTACTTCC GCGAGAAGGC CCGTCAGCAG
CAGTTCTCAC GGGTAATTTA A
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| Protein sequence | MIEKYNYSGP RYTSYPTALE FNDGFTEQDL LSAIEHSKSD KLSLYIHIPF CAKLCYYCGC
NKVITRHAHK ADQYIEYLAS EILNRAPLFK GYTVTQMHWG GGTPTFLSPE QILRLTKLLK
DNFNFADEGE FSIEVDPREI ELTMLDTLKE AGFNRISIGV QDFNKQVQEA VNRPQDEQFI
FDLIGKAKAM GFESTNVDLI YGLPHQTPET FAETIQRILD LSPDRLSVFN YAHLPARFAA
QRKIKDEDLP SPQQKLEILH QTIETLVDAG YQYIGMDHFA KPDDELARLQ REGKLHRNFQ
GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYEAID DHGHALWKGC KLNHDDEIRR
VVIKQLICHF DLDMAVIDEK FGFTFEDYFA QDLKLLQTFI DDKLVTIENR RIHVSDTGRL
LIRNICMCFD VYFREKARQQ QFSRVI
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