| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0082 |
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| Symbol | |
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| ID | 4602339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 90316 |
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| End bp | 92769 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779394 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_925964 |
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| Protein GI | 119773224 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.586975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACCTC TGTGTCTGAT ACTGCTCTAC CTGAGTCTGG TAGGGGCAGA GTTTTACTAT
GAAAAATCTC TCAAGCAGGA GCAGGTGGCA GAAGCCCAGT TGGCGCAGGT CAGACAGCAA
ATGTTCCGCT TGCAGCACAT CGTCTCAGAG GCCATGGCGT TACAGGATAC CGACCGTATC
GCTCAGGAGG TGTCACTGGC AGCGACTGAC CTGGAGTTGA TGGTGCTGGT ACTGGTGGAC
CCGGGCAGCA ACATTCGTTA TGCCAACCAT CTGGTGTGGC AGGGCAGTCG CGCCAGTCAG
GTCATCGACG GTTATGAAAC GGCGCGTCAT CAGCAGACGG TGGCCGCCAA AAAGCCATGG
GTACAGGTTA ACTCCGACCG CCTATCGATT CAGGCTTACT ACCCTGTTAA CCACAGTGGT
GTTCCCCGCT ATAGCGAAAT CAACCTAATC TATCTGGAAT ACGACCTCTC GGGTGCCTAC
AGCCGTGCCA TAAGCGAATT GCAGCAACGC TTTTTGCAGA TATGGGGTGG CGGCGCCTTA
CTGATCCTGA TGTTTTTAAC CGTGTTTCAT TATGTGGGCG TCAGACCGCT TCGCAGTTTG
CTGCGTTTGG CCCGCCTGAA GCAGGCGGAG CCTTTGGCGC AGACTGTGCC CATGGCCTCC
AGCGAAGTCG CCAAATTGCA GCAGTACATG TACCAGACTG AACTCAAGCT CAAGCGCACC
CTCAAGCAGC TGCGAGACTC GGAGCAGCGC TGGTTGTTTG CGGTGGAAGG TTCGCAAACC
GGTATTTGGG ATTGGCAGAT AAGCAGTGGC GAACTGTTTT TGTCTGACCG CTGGAAAGAA
ATGCTGGGTT ATGGCCCCAC TGAGCTGAAA AACGAGTACA GCTCTTGGGA AGGCCGCTTG
CACCCGGATG ATAAAGCACG GGTGCTGGAG CGACTGCAAA GCTATCTCAA GGGCGAAGCC
GATGTTTACG AGAGCCGCCA TCGCCTGAAA CACAGGCAGG GGCACTATAT TTGGGTGCTC
GATCGCGGCA TGGTGGTGGA ATGGCAAGAG GATGGTCGAC CGGCACGGGT GATAGGCAGC
CAGCGTGATG TATCGGAAGA TATGCGTAAT CAGCAGGCCA TCGCCCATCA GGCCAACCAC
GACTCCCTGA CCAACCTGGC CAACCGCCGG GCAGTGATGG ACGCCCTGTT TGAGTTTCAG
CAAGCGGGTC CCGGCAGCAT GTTACGCTTG GGCGCCCTGC TACTGATTGA TTTGGACAAC
TTTAAACTCG TCAACGATGC TCTGGGTCAT CACCATGGCG ACCGCCTGCT GATTCAGGCC
GCAGCCAGAC TGTCGGGCTT TTTCAGCGGT AATGCCCTTG TGGCACGGTT GGGCGGCGAT
GAGTTCGCGA TTATGGTTCT CGACCTGGCG ACCGACACTG AGCAGGCAGC TCATCAGGCG
ATGCAGCTGG GAGCCGAGCT GAAACAGCAG ATTGCCCGCA GTTTTCAGCT CTCGGATCAG
CAAATCAATG TCACCGCCTC CGTGGGCGTG TGCCTGTTTG ATAATCATCA TCCGGTTGAG
CCGGCGCAGC TGCTTAAGCA TGCAGATATG GCCATGTACG CGGCCAAAGA CGGTGGCCGC
AACGGTTGTG CCCTTTACAG TGACGAACTG GAAGATAAGG CAACAGAAAA CCTGTGGCTG
CAAAACGAGT TGCGGCATGC CATCGAGCGT GAACAATTGT CTTTGGTGTT TCAGCCCATC
TTTAATCACG ATGGTGAGCT GGTATGCTGT GAAGCCCTGT GCCGCTGGCA TCATCCTGAA
CGCGGTCCTA TTTCACCGGC ACAATTTATT CCGGTGGCCG AAGATTCGGG TCTTATCATC
GGCATTGGCC AATGGGTATT GCTGGAAGTA TGTCGCACGC TAAAGGCCAT GTCAGAAAAG
GGCACCCCCA TGCCGGCGGT GGCCGTGAAC ATCAGTGCGA GGCACTTCAA CCAGATTGAT
TTTGTCGAAC GCCTGCTGGC CCTGCTCAAA GCGCATCAGG TGTCGCCAGC ACAGATTGAA
CTTGAGCTGA CTGAATACGC GCTGTTGTCC AACCTCAATG CCATCAGCGA GCGGATGCAG
CGACTGCGCA GCGCCGGGTT TTCCATCGCC ATCGATGACT TTGGTACCGG CTATTCGTCA
CTGAGTTATC TGCAGAGTCT GCCGCTCTCC AGGCTGAAGC TGGACGCCGC CTTTGTCGGC
CGTATCGGTA CCGAAGCGGG TAATGCCATA GTGCGGGCCA TTGTGGACAT GGCCCACAGC
CTCATGTTGA AGGTGGTGGC AGAAGGGGTA GAGACCGAGG CTCAGCAGGC CTATCTCTCA
AGCCTGGAGT GTGACTTCTT CCAGGGGTAT TTGCTTGGCA AACCTATGCC AGCCTCAGAG
TTGGTTGCAC GGCGTATCGC CCCCAGCGCC CAAAGCGCCA GTCGCCGTAG CTGA
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| Protein sequence | MAPLCLILLY LSLVGAEFYY EKSLKQEQVA EAQLAQVRQQ MFRLQHIVSE AMALQDTDRI
AQEVSLAATD LELMVLVLVD PGSNIRYANH LVWQGSRASQ VIDGYETARH QQTVAAKKPW
VQVNSDRLSI QAYYPVNHSG VPRYSEINLI YLEYDLSGAY SRAISELQQR FLQIWGGGAL
LILMFLTVFH YVGVRPLRSL LRLARLKQAE PLAQTVPMAS SEVAKLQQYM YQTELKLKRT
LKQLRDSEQR WLFAVEGSQT GIWDWQISSG ELFLSDRWKE MLGYGPTELK NEYSSWEGRL
HPDDKARVLE RLQSYLKGEA DVYESRHRLK HRQGHYIWVL DRGMVVEWQE DGRPARVIGS
QRDVSEDMRN QQAIAHQANH DSLTNLANRR AVMDALFEFQ QAGPGSMLRL GALLLIDLDN
FKLVNDALGH HHGDRLLIQA AARLSGFFSG NALVARLGGD EFAIMVLDLA TDTEQAAHQA
MQLGAELKQQ IARSFQLSDQ QINVTASVGV CLFDNHHPVE PAQLLKHADM AMYAAKDGGR
NGCALYSDEL EDKATENLWL QNELRHAIER EQLSLVFQPI FNHDGELVCC EALCRWHHPE
RGPISPAQFI PVAEDSGLII GIGQWVLLEV CRTLKAMSEK GTPMPAVAVN ISARHFNQID
FVERLLALLK AHQVSPAQIE LELTEYALLS NLNAISERMQ RLRSAGFSIA IDDFGTGYSS
LSYLQSLPLS RLKLDAAFVG RIGTEAGNAI VRAIVDMAHS LMLKVVAEGV ETEAQQAYLS
SLECDFFQGY LLGKPMPASE LVARRIAPSA QSASRRS
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