Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0052 |
Symbol | |
ID | 4602309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 54060 |
End bp | 54896 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639779361 |
Product | shikimate dehydrogenase |
Protein accession | YP_925934 |
Protein GI | 119773194 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0642399 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0742475 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTGTT TATCCATGAC AGACAGATTC GCCGTATTTG GTAATCCCAT AAGCCACAGT AAGTCGCCAC AAATTCATGC CATGTTTGCC AAAGAAACAG GGCAGACCCT CACTTATGAG GCAATTCTGG CGCCACTGGA TGGCTTTGCC GAAGCCGTGA CTGCGTTTAT GGCAGCAGGC GGATGTGGGG CGAATGTGAC CGTGCCTTTT AAAGAGCAGG CCTTTACTCT GTGCGATGAG CTCAGTGATG ACGCCCGCAT TGCAGGTGCG GTCAATACCT TGATAAAGCT GCCGGATGGA CGCCTTCGGG GTGACAACAC CGACGGCATG GGGCTGGTGG CGGATTTAAT CCGGCATGGT GTTGAGTTAA ATAATAAGCG AGTGCTTTTG GTGGGTGCCG GTGGTGCTGC CCGCGGTGCG TTATTGCCGC TCGTTCGTGC GGGTGCCAAG CTGACCATCA GCAACCGCAC CTTGAGCAAA GCTGAGGCCC TGGCAGCATT GTGTCCTAAG GTTAATGTCG AGGTTATTTC AGGCAGTCAT ATCCGTAGCC CCTTTGATGT GATTATTAAT TCAACATCTG CGAGCCTCAG CGGTGACCTG CCAGTAATAG CTGCTAACGC CATCGACAAT CAGACCGTGT GCTATGACAT GATGTATGGT GCCAAACCGA CAGTCTTTAA TGAGTGGGCC CGGTCTTTAG GTGCCAAAAT CTGTATCGAT GGCTTGGGTA TGTTGGTTGG CCAGGCTGCA GAAAGCTTTT ATTTGTGGCG CAGGGTAAGA CCCAATGCAG CGCCCGTGCT GCAAACCCTG CGGCAGAGTC TTATTTCAGG AGTGTGA
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Protein sequence | MICLSMTDRF AVFGNPISHS KSPQIHAMFA KETGQTLTYE AILAPLDGFA EAVTAFMAAG GCGANVTVPF KEQAFTLCDE LSDDARIAGA VNTLIKLPDG RLRGDNTDGM GLVADLIRHG VELNNKRVLL VGAGGAARGA LLPLVRAGAK LTISNRTLSK AEALAALCPK VNVEVISGSH IRSPFDVIIN STSASLSGDL PVIAANAIDN QTVCYDMMYG AKPTVFNEWA RSLGAKICID GLGMLVGQAA ESFYLWRRVR PNAAPVLQTL RQSLISGV
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