| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0016 |
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| Symbol | |
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| ID | 4602273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 14471 |
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| End bp | 16888 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779325 |
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| Product | DNA topoisomerase (ATP-hydrolyzing) |
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| Protein accession | YP_925898 |
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| Protein GI | 119773158 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.976365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00112252 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGAGA ATACTTACGA TTCGTCGAGT ATTAAGGTAC TTAAAGGCCT TGATGCAGTA
CGCAAAAGAC CCGGGATGTA TATCGGTGAC ACCGACGATG GAACCGGTCT GCATCACATG
GTGTTTGAGG TCGTCGACAA CTCTATCGAC GAAGCCCTGG CTGGGCATTG CAGCGAAATC
ACCATCACCA TCCATGTGGA TGGTTCAGTC TCGGTAAAAG ATGACGGCCG TGGTATTCCG
GTAGCCATTC ATCCTGAAGA AGGGGTGTCT GCCGCAGAAG TGATCATGAC AGTACTGCAC
GCCGGTGGTA AGTTCGACGA CAACTCCTAT AAGGTGTCCG GTGGTTTGCA CGGTGTGGGT
GTGTCTGTGG TGAACGCCCT GTCCAAGAAG CTGCAGCTGA CCATTCGTCG TGACGGCAAG
GTACACGAGC AGTTTTACAC CCACGGTGTA CCTGATGCGC CAATCAAGGT TGTTGGTGAT
GCCACCAAAA CCGGTACCGA AGTACGTTTT TGGCCAAGCG AAGAAACCTT CTCCGACACC
CTGTTCCATT TCGATATTCT CGCCAAGCGC GTTCGCGAGC TGTCGTTCCT GAACTCAGGT
GTGGGTATTC GTCTGGTTGA CGAGCGCGAC AACAAAGATG AATTCTTCAA ATATGAAGGT
GGTATCAGTG CGTTCGTTGA GTACCTGAAC CGCAACAAGA CGCCGGTAAA CAAGGACATC
TTCCACTTCG CCCAGGAGCG CGAAGACGGT ATCACCGTGG AAGTGGCCAT GCAGTGGAAC
GATGGTTTCC AGGAAAACAT CTACTGTTTT ACCAATAACA TTCCCCAGCG TGATGGTGGT
ACCCACCTGG CCGGTTTCCG CGGCGCGCTC ACCCGTAACC TCAACAACTA TATGGAAGCT
GAGGGTTACA ACAAGAAGAA CAAAACCAAC GCCACCGGTG ACGATGCCCG TGAAGGTTTG
ACTGCCGTTA TTTCGGTGAA GGTGCCGGAT CCCAAGTTCA GCTCTCAGAC CAAAGACAAG
CTGGTTTCCA GTGAAGTGAA GTCTGCTGTT GAGCAGACCA TGGGTGAGAA GCTCGGCGAT
TATCTGCTGG AAAACCCAGG TGATGCCAAG CTGATTGTCG GCAAGATCAT CGACGCGGCC
CGTGCCCGTG AAGCGGCCCG TAAGGCCCGT GAAATGACCC GCCGTAAAGG CGCGTTGGAC
CTCGGTGGTC TGCCGGGCAA ACTGGCAGAC TGTCAGGAAA AAGATCCCGG ACTCTCCGAA
ATCTACATAG TGGAGGGTGA TTCGGCCGGT GGCTCTGCTA AACAAGGCCG AAACCGTAAA
AATCAGGCGA TTCTGCCACT GAAGGGTAAA ATCCTTAACG TAGAAAAAGC CCGCTTCGAC
AAGATGCTGT CTTCTCAGGA AGTGGCGACC CTTATCACCG CCTTGGGCTG TGGCATCGGC
CGTGATGAGT ACGACCCGGA CAAGACCCGT TACCACTACA TCATCATCAT GACGGATGCT
GACGTCGACG GTTCTCACAT TCGTACCCTG CTGCTGACCT TCTTCTTCCG TCAGATGCCT
GAGCTGATTG AGCGCGGCTA CGTGTATATC GCCCAGCCAC CACTGTACAA GGTGAAAAAG
GGTAAGCACG AACAGTACCT GAAAGACGAT CCAGCCCTGA CCGAGTTCCT GACAACGGGT
GCTCTCGACG GCGCTTCTAT TCACCCGTCA CAGGGCGCAC CCGGCATGAG CGGCGAGCCA
CTGGAAAAGC TGGTGAATCA GTACCGCGAA GTGGAAGGCA TCATCGCCCG TCTGGATCTG
CGTTATCCAG AAGTGCTGAC CGACCGCATG CTGTATCACC CAGTGCTGAG CAACGACATT
CTGGCTGATC AGGCCAAAGT ACAGGCCTGG TGTGATGCCT TTGTGGCCGA TCTGGTTGAG
CGTGAAAGCA GCGGCGTACT TTACAACGCC GTGGCCGAGC ACGACCCTGA GCGTCAGGTA
TACGTACCCA AGGTGACTCT GCGTCGCCAC GGTATCGACC ATGAGTATCT GTTCAGCTAC
GACTTCTTCC AGTCAAGCGA CTATCGCAAG ATGGGCGCTC TGGCCAACGC ACTCGATGGC
CTGATTGAAG AGGGCGGTTA CGTGCAGCGC GGTGAGAAAG TGAAGCCGGT GACCAGCTTT
ATCGAAGCCC TTGACTGGCT GGTGGGTGAG TCCAAGCGTG GCCTCTACAT CCAGCGCTAT
AAAGGTCTGG GTGAAATGAA CCCTGAGCAG CTGTGGGAAA CCACCATGGA TCCTGAGAGC
CGCCGTATGC TGCAGGTAAC CATTGAAGAC GCCATTGCCG CCGATCAACT GTTTACCTGT
TTGATGGGTG ATCAGGTTGA GCCGCGCCGT GACTTTATCG AGGCCAACGC TCTTAACGTG
GCTAACCTCG ACGTGTAA
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| Protein sequence | MSENTYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGHCSEI
TITIHVDGSV SVKDDGRGIP VAIHPEEGVS AAEVIMTVLH AGGKFDDNSY KVSGGLHGVG
VSVVNALSKK LQLTIRRDGK VHEQFYTHGV PDAPIKVVGD ATKTGTEVRF WPSEETFSDT
LFHFDILAKR VRELSFLNSG VGIRLVDERD NKDEFFKYEG GISAFVEYLN RNKTPVNKDI
FHFAQEREDG ITVEVAMQWN DGFQENIYCF TNNIPQRDGG THLAGFRGAL TRNLNNYMEA
EGYNKKNKTN ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKSAV EQTMGEKLGD
YLLENPGDAK LIVGKIIDAA RAREAARKAR EMTRRKGALD LGGLPGKLAD CQEKDPGLSE
IYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVAT LITALGCGIG
RDEYDPDKTR YHYIIIMTDA DVDGSHIRTL LLTFFFRQMP ELIERGYVYI AQPPLYKVKK
GKHEQYLKDD PALTEFLTTG ALDGASIHPS QGAPGMSGEP LEKLVNQYRE VEGIIARLDL
RYPEVLTDRM LYHPVLSNDI LADQAKVQAW CDAFVADLVE RESSGVLYNA VAEHDPERQV
YVPKVTLRRH GIDHEYLFSY DFFQSSDYRK MGALANALDG LIEEGGYVQR GEKVKPVTSF
IEALDWLVGE SKRGLYIQRY KGLGEMNPEQ LWETTMDPES RRMLQVTIED AIAADQLFTC
LMGDQVEPRR DFIEANALNV ANLDV
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