Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0009 |
Symbol | |
ID | 4602266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 7951 |
End bp | 9576 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639779318 |
Product | inner membrane protein, 60 kDa |
Protein accession | YP_925891 |
Protein GI | 119773151 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000942032 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000799802 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAATCAC AACGCAATCT ATTGCTCATC GGCCTGCTGT TTGTCAGCTT TTTGCTTTGG CAACAGTGGG AATCCGACAA GGCGCCCAAG CCAGCCACAG AAGTAACTGC GGCGGCCCAA ATCCACGACC AGGCTATCAA CAGTGACGTT CCAACAGCCG ATGCCGGTGT ACCTGCCACA GTGGCAGCAA CCCAAAACCT GATCCTCGTT ACCACAGATC AACTGGAAAT CCAGATTAAT CCTGTGGGCG GTGACATAGT GCATGCCGCC CTGCTGACCC ATAAGCTGGA ACAAAACGAA GAAGCACCTT TTGTTCTGCT GGAGCAGAAA AACAACTTCT CCTACATCGC CCAGAGTGGT CTGATTGGTC GTGATGGTAT CGACAGCGCC GCCAGTGGCC GCGCCAAGTT CGCTGCCGCC GCCGACGCCT ACACCCTGGC TGACGGCCAG GACACCCTGG AAGTGCCACT GACTCTGACC ACAGATGCCG GTGTAACCTT CACCAAGGTG TTCGTGTTCA AGCGTGGTCA GTTTGATGTG GGCGTGGATT ACCGCGTTGC CAACAACTCT GCAGCCCCTG TACAGGTGCA GATGTATGGC CAAATCAAGC AAACCATCAC TGCCAGCGAA AGCAGCATGA TGATGCCCAC CTACCGTGGC GCCGCCTTCT CAACCGCCGA TGTGCGTTAT GAGAAGTACA GCTTCGATGA CATGGGTAAA AAAGACCTCG AAGAGCCGAC TCTGGGTGGT TGGGTTGCCA TGCTGCAACA CTACTTCGTG TCTGCCTGGG TTCCCGCTGC AGCTGACAAG AACACCCTGT TCACCTCTGT CAGTGCCGGT GGTCTGGCCA ATATCGGCTT CAAGGGCTCG GTTCATGACG TAGCACCCGG TGCCACAGAA ACCATTTCCG CCACCTTCTA CGTTGGTCCA AAAGATCAGG CTGCTCTGTC TGCTTTGTCT GACACCCTGA ACCTGGTAGT GGATTACGGT TTCCTCTGGT GGCTGGCTGT ACCAATCCAC TGGATCCTGA TGTTCTTCCA AAGCCTGGTG CACAACTGGG GTGTGGCCAT CATTCTGGTG ACCCTGACTG TTCGTGGTCT CTTGTATCCA CTGACCAAGG CACAGTATGT GTCCATGGCC AAGATGCGTA ACCTGCAGCC TAAATTGCAG GACCTGAAAG ACCGCTTTGG TGATGACCGT CAGAAGATGG GTCAGGCCAT GATGGAGCTG TACAAGAAGG AAAAGGTTAA CCCCATGGGC GGCTGTCTGC CCATCCTGCT GCAGATGCCA ATCTTCATCG CCCTGTACTG GGTGCTGCTG GAAAGCGTTG AACTGCGCCA CGCGCCATTT ATGCTGTGGA TCCAGGATTT GTCAGTGCAG GACCCTTACT ACGTACTGCC GCTGCTGATG GGCGCTTCCA TGTGGGCGAT GCAAAAGATG CAGCCAATGG CCCCCAACAT GGACCCGATG CAACAAAAAA TGCTGCAGTG GATGCCGATG ATCTTCACCG TATTCTTCCT GTGGTTCCCA GCAGGTCTGG TACTCTACTG GCTGGTGGGT AACCTGGTTG CCATCACCCA GCAGAAGATT ATTTATGCCT CACTGGAGAA AAAAGGCTTA AAATAA
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Protein sequence | MESQRNLLLI GLLFVSFLLW QQWESDKAPK PATEVTAAAQ IHDQAINSDV PTADAGVPAT VAATQNLILV TTDQLEIQIN PVGGDIVHAA LLTHKLEQNE EAPFVLLEQK NNFSYIAQSG LIGRDGIDSA ASGRAKFAAA ADAYTLADGQ DTLEVPLTLT TDAGVTFTKV FVFKRGQFDV GVDYRVANNS AAPVQVQMYG QIKQTITASE SSMMMPTYRG AAFSTADVRY EKYSFDDMGK KDLEEPTLGG WVAMLQHYFV SAWVPAAADK NTLFTSVSAG GLANIGFKGS VHDVAPGATE TISATFYVGP KDQAALSALS DTLNLVVDYG FLWWLAVPIH WILMFFQSLV HNWGVAIILV TLTVRGLLYP LTKAQYVSMA KMRNLQPKLQ DLKDRFGDDR QKMGQAMMEL YKKEKVNPMG GCLPILLQMP IFIALYWVLL ESVELRHAPF MLWIQDLSVQ DPYYVLPLLM GASMWAMQKM QPMAPNMDPM QQKMLQWMPM IFTVFFLWFP AGLVLYWLVG NLVAITQQKI IYASLEKKGL K
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