Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1331 |
Symbol | |
ID | 4081002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1393679 |
End bp | 1394989 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638009694 |
Product | 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) |
Protein accession | YP_616378 |
Protein GI | 103486817 |
COG category | [C] Energy production and conversion |
COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00114288 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0467379 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAAA CGCCTGCCCG GGCGGATAAG GGGCGTCCGG CGAGCAACCT GCCGCCGCTG TCGCTTCATA TCCCCGAACC GCGCTATCGC CCCGGCGACA CGCCCGACTT CAGCGACATC GAAATCCCTG CGGTTGAGGC GACCCCGCGT CCCGGTGAAG CGACCAGGCC CGACGCAATG CGCGAGCTTT GCTATGGCCT TGTCCGCGTC CTCGATTTCG ACGGCATCGC CAAGGGGCCA TGGAATCCCA ACCTCGCCCC CGACCGGCTG CGCACCATGC TGCGTTACAT GATGCTGACG CGCGCGTTCG ACGATCGCAT GTTCCGCGCA CAGCGGCAGG GCAAGACCAG CTTCTACATG AAATGCACGG GCGAGGAGGC AACCTCGATC GCCTCGACGA TGGCGATCGA CCGCGCCGAC ATGTGCTTCC CCAGCTATCG CCAGCAGGGC ATTTTGATCG CGCGCGACTA TCCGCTGATC CAGATGATGA ACCAGATTTA CTCGAATCGC GGCGATCACC TGTTGGGGCG GCAACTCCCG ATCATGTATT CGGCGCCCGA ACATGGGTTT TTCAGCGTGT CGGGCAACCT CGCCACCCAA TATCCACAGG CGGTGGGCTG GGCGATGGCA TCGGCGTCGA AGGGCGACAC GCGGATCGCG ACCGTGTGGT GCGGCGAAGG CTCGTCCGCC GAGGGGGATT TCCACTCAGC GCTGACTTTC GCCACCGTTT ATAATGCCCC CGTGATTTTC AATGTCGTCA ATAACCAGTG GGCTATTTCG AGCTTTTCGG GCTTTGCCGG CGGCGAGCGC ACGACCTTTG CGGCGCGTGC GGTGGGTTAT GGCATCGCGG GGCTGCGCGT CGATGGCAAC GACCCGCTCG CGGTCTATGC GGCAACGCAA TGGGCAGCCG ATCGCGCGCG GACGAACAAC GGCCCGACGC TGATCGAACA TTTCACCTAT CGCGCCGAAG GGCACAGCAC CTCGGACGAC CCCGGCGCCT ATCGCGCGGC GCAGGAAGCG AGCGCCTGGC CGTTCGGCGA CCCGATCGCG CGGCTCAAGC AGCATCTGAT CGCGCTTGGC GAATGGGACG ACGCGCGCCA CGAAGCGCAG GCGAAGGAAC TCGACGATCT GGTCAAGACG ACGCAGAAGC AGTCGGAAAA GCTTGGCATA TTGGGTCACG GGATGCACCA GCCGTTCGAA ACGATGTTCG AGGACGTTTT CGAGGAGATG CCCTGGCACC TCAAGGAACA ATGCGCGCAG ATGCTCGCCG AGCAAGAGGC CAAGTTCGGC CCCGACTGGA AGCCCGAATG A
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Protein sequence | MPETPARADK GRPASNLPPL SLHIPEPRYR PGDTPDFSDI EIPAVEATPR PGEATRPDAM RELCYGLVRV LDFDGIAKGP WNPNLAPDRL RTMLRYMMLT RAFDDRMFRA QRQGKTSFYM KCTGEEATSI ASTMAIDRAD MCFPSYRQQG ILIARDYPLI QMMNQIYSNR GDHLLGRQLP IMYSAPEHGF FSVSGNLATQ YPQAVGWAMA SASKGDTRIA TVWCGEGSSA EGDFHSALTF ATVYNAPVIF NVVNNQWAIS SFSGFAGGER TTFAARAVGY GIAGLRVDGN DPLAVYAATQ WAADRARTNN GPTLIEHFTY RAEGHSTSDD PGAYRAAQEA SAWPFGDPIA RLKQHLIALG EWDDARHEAQ AKELDDLVKT TQKQSEKLGI LGHGMHQPFE TMFEDVFEEM PWHLKEQCAQ MLAEQEAKFG PDWKPE
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