Gene Sala_0896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0896 
Symbol 
ID4082796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp904966 
End bp905622 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content64% 
IMG OID638009257 
ProductTetR family transcriptional regulator 
Protein accessionYP_615947 
Protein GI103486386 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00832617 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAC CGGCGCTCGC GCAAGCTCCC GCGCCCGAAC GAAATGGTCG CAAGCTGGGG 
GCAAAGGGAC AGCGGACACG GCGACAATTG ATTGAGGCGA CGGTCGAGCT GCTGAAAACG
CACGGACTGC GCGATGTGTC GGTGGTTGAT GTCGCGCGCG CCGCGAATAC GTCGCCCGCA
ACCTTCTATG TCTATTTCAA GGGGGTGCCC GAAGCGGTGC TCGCGGCGCT GGAAAATAGC
AGCCAGACCT CTCCCGAACT GGAGGCGTTG ATGGCGCGCG ACTGGCTGGC GCCGGGTGGG
GCCGAGGCCG CTGCCGCCTT TGTCGAAGAA TATACCGCCC TTTGGAACAA CAATCGCACG
ATCTTCGTCG TCCGCAACCT GGCTGCCGAC GAGGGCGATG ACCGTTTTTA CGAGGCCCGG
ATGACGCAGG CCTTGCCGAT CATGAATGCG ATCAGTCACC AGATCGAGCG CGCGCAGACG
GCCGGGCGCA TCCCGGCGTC GCTTTCGCCG CGCGCCTGCG CCGGCACGAT CTTGATGATG
CTCGAACGCC TTTCGGCGAT CGGGCCGATG AGCCGGGAGG AAGATCGCGT CGGATACGCC
AGTCTGAAAG CCGCAGCGGC GCACAGCCTC GCGATGATGC TGGGCGTCAG GGACTGA
 
Protein sequence
MNEPALAQAP APERNGRKLG AKGQRTRRQL IEATVELLKT HGLRDVSVVD VARAANTSPA 
TFYVYFKGVP EAVLAALENS SQTSPELEAL MARDWLAPGG AEAAAAFVEE YTALWNNNRT
IFVVRNLAAD EGDDRFYEAR MTQALPIMNA ISHQIERAQT AGRIPASLSP RACAGTILMM
LERLSAIGPM SREEDRVGYA SLKAAAAHSL AMMLGVRD