Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0896 |
Symbol | |
ID | 4082796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 904966 |
End bp | 905622 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638009257 |
Product | TetR family transcriptional regulator |
Protein accession | YP_615947 |
Protein GI | 103486386 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00832617 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAC CGGCGCTCGC GCAAGCTCCC GCGCCCGAAC GAAATGGTCG CAAGCTGGGG GCAAAGGGAC AGCGGACACG GCGACAATTG ATTGAGGCGA CGGTCGAGCT GCTGAAAACG CACGGACTGC GCGATGTGTC GGTGGTTGAT GTCGCGCGCG CCGCGAATAC GTCGCCCGCA ACCTTCTATG TCTATTTCAA GGGGGTGCCC GAAGCGGTGC TCGCGGCGCT GGAAAATAGC AGCCAGACCT CTCCCGAACT GGAGGCGTTG ATGGCGCGCG ACTGGCTGGC GCCGGGTGGG GCCGAGGCCG CTGCCGCCTT TGTCGAAGAA TATACCGCCC TTTGGAACAA CAATCGCACG ATCTTCGTCG TCCGCAACCT GGCTGCCGAC GAGGGCGATG ACCGTTTTTA CGAGGCCCGG ATGACGCAGG CCTTGCCGAT CATGAATGCG ATCAGTCACC AGATCGAGCG CGCGCAGACG GCCGGGCGCA TCCCGGCGTC GCTTTCGCCG CGCGCCTGCG CCGGCACGAT CTTGATGATG CTCGAACGCC TTTCGGCGAT CGGGCCGATG AGCCGGGAGG AAGATCGCGT CGGATACGCC AGTCTGAAAG CCGCAGCGGC GCACAGCCTC GCGATGATGC TGGGCGTCAG GGACTGA
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Protein sequence | MNEPALAQAP APERNGRKLG AKGQRTRRQL IEATVELLKT HGLRDVSVVD VARAANTSPA TFYVYFKGVP EAVLAALENS SQTSPELEAL MARDWLAPGG AEAAAAFVEE YTALWNNNRT IFVVRNLAAD EGDDRFYEAR MTQALPIMNA ISHQIERAQT AGRIPASLSP RACAGTILMM LERLSAIGPM SREEDRVGYA SLKAAAAHSL AMMLGVRD
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