| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0601 |
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| Symbol | |
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| ID | 4116371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 628534 |
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| End bp | 629619 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 638035387 |
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| Product | PDZ/DHR/GLGF |
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| Protein accession | YP_643384 |
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| Protein GI | 108803447 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.367147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCGGAA GGTACAGGAT AACGCTCGCG GCGGCCGCGG CGCTGCTCGC CGCGCTCCTC
CTAGCGGGGG CCTGCTCGGA GGAGAACGCC CGGCAACCCC ACGCCCCCGA CCAGAGCGCC
GCGCAGGCCG CCCAGAACAT CCCGCAGGAC GAGCCGGTGG CGCGGGTGGC CGCGAAGGTG
GAGCCGAGCG TGGTGCAGGT CAACACCCGG GCCATCCAGC TCACCCCCTT CGGGCCGGAG
AGCCAGAGCG GGGTGGGCAG CGGGGTCATC TACCGGGAGG ACGGCTACAT CATCACCAAC
AACCACGTGG TGGAGGGGGC CGACGAGGTG AACGTGGCCT TCGCCGACGG CTCCACCGAG
CGCGGCCGGG TGGTGGGCTC GGACCCGCGC ACGGACATCG CGGTGGTCAA GGTGGACCGG
GACAGCCTCC CCGCCGCCGC CTTCAGCGAC GCCGAGCCGG TCGTGGGCCA GCTCGCGGTG
GCCATAGGCA GCCCCTCGGG CTTCGAGTCC ACGGTGACCG CCGGGGTGGT GAGCGGGCTG
GACCGCGAGA TCCCGCCGCA GCTCACCGGC ACCGGCTACC AGATCCCCTC GCTGACCGGC
CTGATCCAGA CGGACGCCGC GATCTCGCCG GGCTCCTCGG GCGGCGCCCT GGCGAACCGC
TCCGGCGAGA TCATCGGGAT CAACGTGGCC TACCTGCCGC CCCAGACGGG GGCGGAGAGC
ATCGGGTTCG CGATCCCCGC CTCGGTGGCG ACCTCGGTGG CCGACCAGCT CATCGAGAGC
GGCGAGGTGC GCGCGCCGTT CCTGGGGATC GTGCCGGTGG ACCTGACGAG CCAGGAGGCG
GAGCTCTACG GCCTCGAGGT GACCTCGGGC GCCCTGGTGG CGCGGGTGGA GCCGGGGAGC
CCGGCCGACG AGGCGGGCCT GCGCCGCGGC GACATCATCG TGGCGCTGGA CGGCACGGAG
ATCCGCAGCT CCGGCGACCT CTACTCAGCC CTCAGGGACT ACCGCCCGGG CGACGAGGTG
CGCCTGACGG TGGTCCGCAA CGGCGAACGC CAGAGGATCG AGGTGACCCT CGGTGAGCGG
CCGTAG
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| Protein sequence | MIGRYRITLA AAAALLAALL LAGACSEENA RQPHAPDQSA AQAAQNIPQD EPVARVAAKV
EPSVVQVNTR AIQLTPFGPE SQSGVGSGVI YREDGYIITN NHVVEGADEV NVAFADGSTE
RGRVVGSDPR TDIAVVKVDR DSLPAAAFSD AEPVVGQLAV AIGSPSGFES TVTAGVVSGL
DREIPPQLTG TGYQIPSLTG LIQTDAAISP GSSGGALANR SGEIIGINVA YLPPQTGAES
IGFAIPASVA TSVADQLIES GEVRAPFLGI VPVDLTSQEA ELYGLEVTSG ALVARVEPGS
PADEAGLRRG DIIVALDGTE IRSSGDLYSA LRDYRPGDEV RLTVVRNGER QRIEVTLGER
P
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