Gene Rpic12D_2957 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2957 
Symbol 
ID8020629 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3103297 
End bp3104217 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content69% 
IMG OID644831744 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002982899 
Protein GI241664539 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0014906 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACCGGC TCTCTGATGT GGCGATCTTC GTGCAGGTAG TGGAGCGCGG CAGCTTGTCG 
GCGGCGGCCG AGGCGATGGG CATGTCGCGC GGGGTGATCA GCAAGGCGCT GGCGCGGCTG
GAGGCGCGGT TGCAGACGCG TCTGCTGCAA CGGACAACGC GGCGCCTGTC GCTCACCGAA
GCGGGCGCGG CGTTCTTCGA GAAAAGCCGC GAGGGCCTGG CGCTCGTCGA TGCGGCCGAA
CAGGCCGTGA GCGCCTTGCG CGACGAGGCG CGCGGCACGC TGCGCGTGTC GGCGCCGGCC
TCGTATGCGG TGACATTGCT GGCGCCGCTC TTGGGCGCAT TCCAGGCGCG CTATCCCGCC
GTGCAGATCG ACCTGGACAT GAACGACCGC TACGCGGATC TGGTCGCGGG GCGCATCGAC
GTGGCGATCC GCATTGGCAT GCTCGAGGAC TCTTCGCTGG TCGCGCGGCG GCTGGCGAAT
TGCGCGCACG CCATCTACGG GGCGCCATCG TATTTTCGCG AGCGGGGCAT TCCGCAGTCG
CCCGAGGATT TGCGCAATCA CAACTGCCTC GTCTACGCCA ACTACGACGG GCCACACGAC
TGGGTGCTGA CGGACGCCGC CGGCCATCGT CATATCGCTC ACGTCGCGGG CTCGATGCTC
GCCAATAACA GCCTGGTGCT GCGCGAGGCC GCACGGTCAG GGCTGGGCGT GTCGCTGGGG
CCAGCGTATC TGGTGCGTGA CGATGTTGCG GCTGGGCGCT TGCAGGCGGT GCTGACCGAC
TACACGGCGC GGGAGGTGCC GCTGCACGCG GTGTTCACGC AGCGTGTGCA CCTGCTACCG
AAGGTGCGGG CGTTTGTCGA TTTCCTGGGC GACCACCTGA GCAGCACCGG CGCGATGGGG
CCACTGCCGC TGTCCGCCTA G
 
Protein sequence
MDRLSDVAIF VQVVERGSLS AAAEAMGMSR GVISKALARL EARLQTRLLQ RTTRRLSLTE 
AGAAFFEKSR EGLALVDAAE QAVSALRDEA RGTLRVSAPA SYAVTLLAPL LGAFQARYPA
VQIDLDMNDR YADLVAGRID VAIRIGMLED SSLVARRLAN CAHAIYGAPS YFRERGIPQS
PEDLRNHNCL VYANYDGPHD WVLTDAAGHR HIAHVAGSML ANNSLVLREA ARSGLGVSLG
PAYLVRDDVA AGRLQAVLTD YTAREVPLHA VFTQRVHLLP KVRAFVDFLG DHLSSTGAMG
PLPLSA