Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1939 |
Symbol | |
ID | 8019596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 2062743 |
End bp | 2063813 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644830723 |
Product | porin Gram-negative type |
Protein accession | YP_002981892 |
Protein GI | 241663532 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.173023 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0269425 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGTCGA AATTCAAGCG TGGCATGGCC GCGCTGGCAG TGGCATCGGC ACTGGGGGCA GCAAGTGCCG GTGCGCAGGC GCAATCGTCC GTCACGCTGT ACGGCCAGGT GGATGCCTGG GCGGGCGCCA CCAAGAGCCT GGGCGCATCG GACCGCGCCT GGGGCGTCAA CTCGGGCGGG ATGTCCACGT CGTACTGGGG CATGAAGGGC AGCGAAGACC TCGGCAACGG CCTGAAGGCG ATCTTCACGC TGGAAGCGTT CTTCCGCCCC GACACCGGCA AGTACGGCCG CTTTGACGGC GACACGTTCT TCGCCCGCAA CTCGTTCGTC GGCCTGCAAT CGAGCACCTG GGGCTCGATC AAGCTCGGCC GCCTGACGCC GCCGTATTTC GTATCGACGA TCCTGTTCAA CCCGTTCATC GATTCGTACA CGTTCTCGCC AATGGTGTTC CACACGTACC TCGGCAACGG CCTGAGCGGC CCCGGCGGCA TCTCGGGCCT CGTCGGCGAT TCGGGCTGGA ACAACGCGAT CATGTATTCG ACGCCGGACT TCAACGGTCT GACCGCCAAC TTCATCTACG GCGCGGGCGA GCAGGCTGGC CACAATGGCC AGAACAAGTG GGGCGGCAAC TTCCTGTACT TCCATGGCAA CTTCGCGGCC ACGGCGGCTT TCCAGCAAGT GCGCTTCGAT TCTGCCCCGG GTGACCTGAA CGCGCTGGTA GCGGGCTTCT CGCGCCAGAC GGCCGCGCAA CTCGGCGCCA CATACGACTT TGGCGTGGTC AAGCTGTACG GCCAGTACCA GTACATCAAG AACGCCATCA ACTCCGGCGA TGCGAAGAGC AACGGCGGCC AGCTGGGGGT ATCGGTGCCG GTCGGCCCGG GCAGCATCCT CGCGTCGTAC GCGTACACGA AAACTTCGGG CGCGGCCGAC GTAAAGCGCA ACACGTGGGC CGTTGGTTAC GACTATTCGC TGTCCAAGCG CACCGACGTG TACGCCGCGT ACATGCGCGA CAAGGTGACG AACCTCAGCT CGGCAGACAC CTTCGGCGTG GGCATCCGCG CGAAGTTCTA A
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Protein sequence | MQSKFKRGMA ALAVASALGA ASAGAQAQSS VTLYGQVDAW AGATKSLGAS DRAWGVNSGG MSTSYWGMKG SEDLGNGLKA IFTLEAFFRP DTGKYGRFDG DTFFARNSFV GLQSSTWGSI KLGRLTPPYF VSTILFNPFI DSYTFSPMVF HTYLGNGLSG PGGISGLVGD SGWNNAIMYS TPDFNGLTAN FIYGAGEQAG HNGQNKWGGN FLYFHGNFAA TAAFQQVRFD SAPGDLNALV AGFSRQTAAQ LGATYDFGVV KLYGQYQYIK NAINSGDAKS NGGQLGVSVP VGPGSILASY AYTKTSGAAD VKRNTWAVGY DYSLSKRTDV YAAYMRDKVT NLSSADTFGV GIRAKF
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