Gene Rpic12D_1939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1939 
Symbol 
ID8019596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2062743 
End bp2063813 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content64% 
IMG OID644830723 
Productporin Gram-negative type 
Protein accessionYP_002981892 
Protein GI241663532 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.173023 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0269425 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTCGA AATTCAAGCG TGGCATGGCC GCGCTGGCAG TGGCATCGGC ACTGGGGGCA 
GCAAGTGCCG GTGCGCAGGC GCAATCGTCC GTCACGCTGT ACGGCCAGGT GGATGCCTGG
GCGGGCGCCA CCAAGAGCCT GGGCGCATCG GACCGCGCCT GGGGCGTCAA CTCGGGCGGG
ATGTCCACGT CGTACTGGGG CATGAAGGGC AGCGAAGACC TCGGCAACGG CCTGAAGGCG
ATCTTCACGC TGGAAGCGTT CTTCCGCCCC GACACCGGCA AGTACGGCCG CTTTGACGGC
GACACGTTCT TCGCCCGCAA CTCGTTCGTC GGCCTGCAAT CGAGCACCTG GGGCTCGATC
AAGCTCGGCC GCCTGACGCC GCCGTATTTC GTATCGACGA TCCTGTTCAA CCCGTTCATC
GATTCGTACA CGTTCTCGCC AATGGTGTTC CACACGTACC TCGGCAACGG CCTGAGCGGC
CCCGGCGGCA TCTCGGGCCT CGTCGGCGAT TCGGGCTGGA ACAACGCGAT CATGTATTCG
ACGCCGGACT TCAACGGTCT GACCGCCAAC TTCATCTACG GCGCGGGCGA GCAGGCTGGC
CACAATGGCC AGAACAAGTG GGGCGGCAAC TTCCTGTACT TCCATGGCAA CTTCGCGGCC
ACGGCGGCTT TCCAGCAAGT GCGCTTCGAT TCTGCCCCGG GTGACCTGAA CGCGCTGGTA
GCGGGCTTCT CGCGCCAGAC GGCCGCGCAA CTCGGCGCCA CATACGACTT TGGCGTGGTC
AAGCTGTACG GCCAGTACCA GTACATCAAG AACGCCATCA ACTCCGGCGA TGCGAAGAGC
AACGGCGGCC AGCTGGGGGT ATCGGTGCCG GTCGGCCCGG GCAGCATCCT CGCGTCGTAC
GCGTACACGA AAACTTCGGG CGCGGCCGAC GTAAAGCGCA ACACGTGGGC CGTTGGTTAC
GACTATTCGC TGTCCAAGCG CACCGACGTG TACGCCGCGT ACATGCGCGA CAAGGTGACG
AACCTCAGCT CGGCAGACAC CTTCGGCGTG GGCATCCGCG CGAAGTTCTA A
 
Protein sequence
MQSKFKRGMA ALAVASALGA ASAGAQAQSS VTLYGQVDAW AGATKSLGAS DRAWGVNSGG 
MSTSYWGMKG SEDLGNGLKA IFTLEAFFRP DTGKYGRFDG DTFFARNSFV GLQSSTWGSI
KLGRLTPPYF VSTILFNPFI DSYTFSPMVF HTYLGNGLSG PGGISGLVGD SGWNNAIMYS
TPDFNGLTAN FIYGAGEQAG HNGQNKWGGN FLYFHGNFAA TAAFQQVRFD SAPGDLNALV
AGFSRQTAAQ LGATYDFGVV KLYGQYQYIK NAINSGDAKS NGGQLGVSVP VGPGSILASY
AYTKTSGAAD VKRNTWAVGY DYSLSKRTDV YAAYMRDKVT NLSSADTFGV GIRAKF