Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4220 |
Symbol | |
ID | 6411904 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4525482 |
End bp | 4527014 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642714102 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_001993191 |
Protein GI | 192292586 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.663619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCCG CTCCGGTCAA ACAACCAATC ACGCCGCTAC AAGGCGCCCC CCGCGCGTTG GCGGCGGTGA CGTTCGGCCT CGCCTCGTTC ATGGCGGTGG TCGATATCAC CGTCGCCAAC GTGTCGGTGC CGACGATCTC CGGCAATCTT GGCGTCAGCT CCGAAGAGGG CGAATGGACG ATCACGTTCT TCGCTATCTC CAACGCGATC TGCATTCCGT TGACCGGCTG GCTCGGCCGA CGCTTCGGGC AGGCACGGCT GTTCGCGGCC TCGGTCGCCG CCTTTACGCT CGCTTCGATC CTGTGCGGGC TGGCGCCGAC GTTCGAAACG CTGCTGATCG CCCGCATCCT GCAGGGCGCG GTCGCGGGTC CGATCGTGCC GCTCAGCCAG GCGCTGCTCG TCGCGGTGTT TCCGCCTGAG AAGCGCACCT TTGCGGTGGC GATGTGGGCG ATGACCAACA TGGCGGGTCC GGTCGCGGGC CCGATGCTCG GCGGCTGGAT CACCGACCAA TTCTCCTGGC CGTGGATCTT CCTGATCAAC GCACCGGTCG GCGTCTTCGT GGTGATCTCG GCCGGAATCC TGCTCCGCGG CAAGGATACG CCGACGGTCC GGCTACCAGT CGATGTCGTG GGCCTCGCCC TGTTGGCGAT CGCGGTGGGC TGCCTTCAGG TCACCTTCGA TCGCGGCCGC ACGCTCGACT GGTTTGCGTC GCCGCTGATC TGTGCCACCG CGACGATCTC GGTGGTCGGC TTCGTTCTCT TGGTGGTCTG GGAACTCGGC GAAGCTCACC CGATCGTGGA TCTGCGCCTG TTCGAATTTC GCAACTTCGC GATCGGTACG TTGAGCGTCG CGGTCGGCTT CGGTCTGTAC TTCGCGGCAC TCGTTCTCGT GCCGCTGTGG CTGCAGACGG ATCTCGGCTA CAGCTCGACC TGGGCCGGCG TCGCGACCGC TCCCATGGGG GTATTCGGAA TCGTGCTGGC GCCGTTTCTC GGCCGCTGGG TGGCGACCCA CGGGCCGCGC CTCTATGCCA GCATCGCCTT CGCCGCCTGG GCGCTGGTGG CGCTGTGGCG TTCGACGATG ACGACCGGCG TGACCGTCGC GGACGTTGCG CTGATCCATC TCGCGCAAGG CATCGGCATC GCATTTTTCC TCACGCCGGT GGTGAGCCTG TCGCTGGCCG GACTGCCGCC CGACAAACTC GCGTCCGCCT CTGGCCTGCA GACCGCAATC CGCATGATGG CCGGCAGCCT GTGCGCATCG ATCGCCCAGA CGTTCTGGGA CGAACGCGCG CGCTTCCATC GCAATCACCT GGTCGATGCC CTGACGGAGC TGAGCGGTCG AGCCGCAACG GCAATCAATC AGTTACGGAG CGCCGGCCTG ACCGAACAGC AGTCCTGGAC GGTGATCAAT CAACAGATCG ACGTTCAGGC GCGCATGCTG TCGCTGAACG ACTTCTTCTA CGTCTCTGCT TTCGCGTTCG CTGCTGCGCT CGGCATCATC TGGCTCGCAC GCGGACCGAA ACAATCAACC TGA
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Protein sequence | MTAAPVKQPI TPLQGAPRAL AAVTFGLASF MAVVDITVAN VSVPTISGNL GVSSEEGEWT ITFFAISNAI CIPLTGWLGR RFGQARLFAA SVAAFTLASI LCGLAPTFET LLIARILQGA VAGPIVPLSQ ALLVAVFPPE KRTFAVAMWA MTNMAGPVAG PMLGGWITDQ FSWPWIFLIN APVGVFVVIS AGILLRGKDT PTVRLPVDVV GLALLAIAVG CLQVTFDRGR TLDWFASPLI CATATISVVG FVLLVVWELG EAHPIVDLRL FEFRNFAIGT LSVAVGFGLY FAALVLVPLW LQTDLGYSST WAGVATAPMG VFGIVLAPFL GRWVATHGPR LYASIAFAAW ALVALWRSTM TTGVTVADVA LIHLAQGIGI AFFLTPVVSL SLAGLPPDKL ASASGLQTAI RMMAGSLCAS IAQTFWDERA RFHRNHLVDA LTELSGRAAT AINQLRSAGL TEQQSWTVIN QQIDVQARML SLNDFFYVSA FAFAAALGII WLARGPKQST
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