| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4050 |
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| Symbol | murD |
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| ID | 6411733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4346223 |
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| End bp | 4347632 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642713932 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001993021 |
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| Protein GI | 192292416 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCCG GCACCTCTTT CGCCGGCCAG TCGGTCGCGG TGTTCGGGCT CGGCGGGTCG
GGGTTGGCGA GCTGCCATGC GCTGAAGGCC GGCGGTGCCG AAGTGATCGC TTGCGACGAT
AATCTCGACC GCATGGTCGA GGCGGCGCAG GCCGGCTTCA TCACCGCGGA TCTGCGCAAT
CTGCCGTGGA CTAATTTTGC AGCGCTGGTG CTGACGCCCG GCGTGCCGCT GACGCATCCG
GCGCCGCATT GGACGGTGCT GAAGGCGCAG GAGGCCGGCG TCGAAGTGAT CGGCGACGTC
GAATTGTTCT GCCGCGAGCG CAAGGCGCAC GCGCCGCGCG CCCCGTTCGT CGCTATCACC
GGCACCAACG GCAAGTCGAC CACGACGGCG CTGATCGCGC ATCTGCTGCG CGAGGCCGGT
TGGGATACCC AGCTCGGCGG CAATATCGGC ACCGCGATCC TGTCGCTGGA GCCGCCCAAG
GATGGCCGCG TCCACGTCAT CGAGATGTCG TCCTATCAGA TCGACCTGAC GCCGTCGCTC
GATCCGACCG TCGGCATCCT GCTCAACGTC ACCGAGGATC ACATCGACCG TCACGGCACG
ATCGAGCACT ACGCTGCGGT GAAGGAGCGG CTGGTGGCTG GCGTGCAGGA CGGCGGCACG
TCGATCATCG GTGTCGACGA TGAGTTCGGC CGTGCCGCGG CGGACCGGAT CGAGCGTGCC
GGAAAGCGCG TGGTGCGGAT GTCGGTGCAG GGGCCGGTTC AGTCCGGCAT CACCGCCGAT
CTTGAAACCA TTCGCCGCAT CGACGGCGGC AAATCCACCG AAGTCGCCAA GCTCGGCGGC
ATCGGCTCGC TGCGCGGGCT GCACAACGCG CAGAATGCCG CAGCCGCAGC GGCTGCGGTG
CTGGCGCTCG GCGTTTCGCC AGAGGTGCTG CAGCAGGGGC TACGCAGCTT CCCCGGCCTC
GCGCACCGGA TGGAGCAGGT CGGCCGCCAA GTGGGCGAGA AGGGGACGAC GCTGTTCGTC
AACGACTCCA AGGCCACCAA TGCCGATGCG GCCGCCAAGG CGCTGGCGTC GTTCGGCGAG
ATCTTCTGGA TCGCCGGCGG CAAGCCGAAG ACCGGCGGCA TCGAGAGCCT GGCCGAGTAC
TTCCCAAGCA TCCGCAAGGC TTACCTGATC GGCCAGGCCG CGCAGGAATT CGCCGCCACG
CTGGAGGGCA GGGTGCCGTA CGAGATCAGC GAGACGCTGG AAGCCGCCGT GCCGGCTGCC
GCGCGCGATG CCGCGGCGTC GGGGCTGGCT GAACCGGTGG TGCTGCTGTC GCCGGCCTGC
GCCTCGTTCG ACCAGTTCCG CAATTTCGAG CTCCGCGGCA CCAGGTTCCG CGAGCTGGTG
ACGGCGCTCG ACGGCGTGAC GCCGGTGTGA
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| Protein sequence | MIPGTSFAGQ SVAVFGLGGS GLASCHALKA GGAEVIACDD NLDRMVEAAQ AGFITADLRN
LPWTNFAALV LTPGVPLTHP APHWTVLKAQ EAGVEVIGDV ELFCRERKAH APRAPFVAIT
GTNGKSTTTA LIAHLLREAG WDTQLGGNIG TAILSLEPPK DGRVHVIEMS SYQIDLTPSL
DPTVGILLNV TEDHIDRHGT IEHYAAVKER LVAGVQDGGT SIIGVDDEFG RAAADRIERA
GKRVVRMSVQ GPVQSGITAD LETIRRIDGG KSTEVAKLGG IGSLRGLHNA QNAAAAAAAV
LALGVSPEVL QQGLRSFPGL AHRMEQVGRQ VGEKGTTLFV NDSKATNADA AAKALASFGE
IFWIAGGKPK TGGIESLAEY FPSIRKAYLI GQAAQEFAAT LEGRVPYEIS ETLEAAVPAA
ARDAAASGLA EPVVLLSPAC ASFDQFRNFE LRGTRFRELV TALDGVTPV
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