Gene Rpal_3020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3020 
Symbol 
ID6410690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp3284441 
End bp3285418 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content67% 
IMG OID642712899 
Product3-oxoacyl-(acyl carrier protein) synthase III 
Protein accessionYP_001992001 
Protein GI192291396 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID[TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.75587 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGGTGA TTCGTTCGGT CGTACTGGGC TGCGGCGCTT ATCTGCCGGA GCGGGTCCTC 
ACCAACGAAG AACTGGCCCG GACGGTCGAC ACCTCGGACG AATGGATCGT CCAGCGCACC 
GGAATCCGCG AACGCCACAT CGCCGCCGAT GGCGAATTCA CCTCGCATCT GGCCACCAAG 
GCCGCCCAGG CGGCGCTCGA CAATGCGGGC ATCACTGCCG ATCAGATCGA CCTGATCGTG 
CTGGCGACCT CGACCCCCGA CCACACCTTC CCGGCGACCG CAGTGCAGGT TCAGGCCGCG 
CTCGGCATGA CCCACGGCGT CGCCTTCGAC CTGCAGGCGG TGTGCTCCGG CTTCGTGTTC 
GCGGTCGCCA CTGCGGACAA TTACCTGCGC GCGGGCTCGG CCAAGCGGGC GCTGGTGATC 
GGCGCCGAGA CCTTCTCCCG CATCCTCGAC TGGAATGATC GCGGCACCTG CGTGCTGTTC 
GGCGACGGTG CCGGCGCGAT CGTGCTCGAG GCGCAGGAAG GCTGGAGCAC GTCCGCCGAC 
CGCGGCGTGC TGACCACGCA TCTGCGCTCG GACGGTCGTC ACAAACACAA GCTGTATGTC 
GACGGCGGCC CGTCGAGCAC CCAGACCGTC GGCCATCTGC GGATGGAAGG GCGCGAGGTG 
TTCAAGCACG CGGTCGGCAT GATCACCGGA GTGATCGTCG ACGCCTTCAA CGCCTCCGGC 
ACCAGCGCCG ACAATGTCGA TTGGTTCGTG CCGCATCAGG CCAACAAGCG GATCATCGAC 
GCCTCGGCGC AGAAGCTGCA CATCGCGCCC GAGAAGGTGG TGATGACGGT CGACCGCCAC 
GGCAATACCT CCGCGGCCTC GATTCCGCTG GCGTTGTGCA CTGCGGTCGC TGACGGCCGC 
ATCCAAAAGG GCCACCTGGT TCTGCTCGAA GCGATGGGCG GCGGCTTCAC CTGGGGCGCC 
GCGCTGCTCC GCTGGTAG
 
Protein sequence
MTVIRSVVLG CGAYLPERVL TNEELARTVD TSDEWIVQRT GIRERHIAAD GEFTSHLATK 
AAQAALDNAG ITADQIDLIV LATSTPDHTF PATAVQVQAA LGMTHGVAFD LQAVCSGFVF 
AVATADNYLR AGSAKRALVI GAETFSRILD WNDRGTCVLF GDGAGAIVLE AQEGWSTSAD 
RGVLTTHLRS DGRHKHKLYV DGGPSSTQTV GHLRMEGREV FKHAVGMITG VIVDAFNASG 
TSADNVDWFV PHQANKRIID ASAQKLHIAP EKVVMTVDRH GNTSAASIPL ALCTAVADGR 
IQKGHLVLLE AMGGGFTWGA ALLRW