Gene RoseRS_1927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_1927 
SymbolthiE 
ID5208888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp2391398 
End bp2392108 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content64% 
IMG OID640595536 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_001276266 
Protein GI148656061 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0119683 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCTGT CCACCCTGAT CGAACCACTC CCGTCGGTCC AGTCTGATCC GATACCGTTT 
CCATCTGGAG GAGGTATTGT CTACGTCATT ACCGACCGGC GCGCAGCTGG AGAGCGTGCG
CTGACGGATA TTGTGAGTGC AGCGTTGCGT GGTGGCGCGC ATGTGATTCA ACTCCGCGAC
AAGGACGTGC CGGCGCGCGA CATGGTTGCA CTGGGGCAGG CGTTACTTCC GCTCACCCGC
GATGCCGGAG TCCCGCTCAT CGTCAACGAC CGTGTCGATG TCGCGCTGGC GCTCGATGCC
GATGGCGTCC ATGTCGGTCA GGACGATATT CCGGCGGAAA TGGTGCGGCG GATCATCGGT
CCGGAACGCA TTCTCGGCGT ATCGGTCGCA ACGGTCGAGC AGGCGCAGCG CGCGATGGAC
GCTGGCGCGA CGTATGTCAG TGTCGGCGAT CTTTTCGGGA CGCCGAGTAA ACCGGATGCG
GGACCACCCA TCGGGCTGGA ACCGCTGGCG GAGATTGCCC GCACGGTCAA CCTGCCGGTG
CTGGGCATCG GCGGCATCAA CCTCGCAAAT GCCGCTTCGG TTATTCGGGC AGGCGCTGTT
GGCGTGGCGG TCATCTCGGC GGTGATCGGC GCGCCAGACC CTGAAGCAGC AACGCGGGCA
CTCCATGCCG TCATTGCGTC AGCGCTCGAT GAACGTGCAC GCGCCGGGTA G
 
Protein sequence
MVLSTLIEPL PSVQSDPIPF PSGGGIVYVI TDRRAAGERA LTDIVSAALR GGAHVIQLRD 
KDVPARDMVA LGQALLPLTR DAGVPLIVND RVDVALALDA DGVHVGQDDI PAEMVRRIIG
PERILGVSVA TVEQAQRAMD AGATYVSVGD LFGTPSKPDA GPPIGLEPLA EIARTVNLPV
LGIGGINLAN AASVIRAGAV GVAVISAVIG APDPEAATRA LHAVIASALD ERARAG