| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2131 |
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| Symbol | |
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| ID | 4038940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2315451 |
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| End bp | 2319014 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637977517 |
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| Product | DNA helicase/exodeoxyribonuclease V subunit A |
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| Protein accession | YP_584279 |
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| Protein GI | 94311069 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.564437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.516906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAG TTCACGCCTA TTTGCGCGAT GGCCAATCCG TGGGCGAGGC CGATTTTACG
CGCGCCGCCT GCGACCCCGG CCGCTCCGTG GTGGTGGAGG CCTGCGCGGG CAGCGGCAAG
ACGTGGCTGC TGGTGGCGCG TCTGGTCCGT CTGCTGCTGG CCGGCGCCGC GCCGCATGAG
ATCCTGGCTA TCACCTTTAC GCGCAAGGCC GCCGAGGAAA TGCGCGAGCG CCTGCTCGAA
GTGCTGTCGC AGCTTGCCGG CGGAACTGAT GAGGCGGTGT TGACGCAGCT GGAAATGCGC
GGGCTGTCTC CAGACGCCGC GCGCGCGGCA TTGCCCCGCG CGCGGACGCT ACATGCACAA
GTGCTGGCGT CACCGGGCCG CATGGCGATC GACACGTTCC ACGGCTGGTT CGGCACGTTG
TTGCGCGGGG CGCCGCTGTC GTCGGGCATC GTGCCCGGCG CGTCGCTCCG CGAGGATGCC
TTGCGCATGA AGCGCGAGGC CTGGGCGCCG TTCTGGCGCG CGCTGGCGCA GCCGCAATAC
GCTGATCTGC GCGAAGCCTA TGAAGCGCTG GTCGATGCGA TCGGTGACTT CCAGGCACGG
GGTCTGCTTG ATCGGATGTT CCACGCACGC AACGAGTGGT TTGCGTTCAA GGAGTCGGGC
GATCCCGCCA CGAAGCTGGC GCAGGATCTT GGTGACGATG CCACCTCCGA CATTTTGGTG
GACGCGCTCT GCGACGACGA CTGGCTCGAG GAATGCGCGC AGATGGCACT GCTGCTCGGT
CGTGGCGGGA AGACCGAGCA GGGGCACGCG TCGAAGATCA TCGACGGACT GCGCGCGATC
CGCGCATGGC GCGACGCGGG CGCCGCGCCG GGCGAGGCCG CCGCCAACGC ATTCCAGTTG
CTGCGTGCCG CGTTTTTCAC CGATGCGGGC AAGCCGCGCT CGCTGCGTCG TACCACGGCA
TTGGCCAAGG TGTGCGGTAG CGAAGGTGCC GTTGACGAAT TGCTGGATCA GCACGCAGAG
CACTGCGCAC GACTGGACGA GATCGCGGCG CGCCGCTGCG AGGCCATGGT GCTCGCGATC
AACCTGGCGC TGTACCGTCT GGGCGATGCA CTGCTCGAAC GTTATCAGCG CCACAAGGGC
GACCAGCGTG CGATGGACTT CGCGGACCTC GAATGGCTGG CGGCGAAGCT GATGGCCGAC
GAGGAAACCG CCACGTACCT GCAGGTGCGT CTCGACGCGC GATATCGTCA CCTGCTGCTT
GACGAGTTCC AGGACACGAA CCCGCTCCAA TGGCGCATCC TGCAGGGCTG GCTGGCCGGC
TATCAGGGGC TGGGAGAGAA GCCCACCGTG TTTCTGGTTG GCGATCCCAA ACAGTCGATC
TACCGTTTCC GTCGCGCGGA CGCGCGCCTG TTCGATGCCG CGCGGGTCAT GCTTCAGGAC
GGATTCGGCG CCACCGTGCT GCGTACCAAC CGCACGCGCC GCAATCGCCC CGAGGTGCTC
GACTGGGTCA ACGCCGTGTT CGATCACGCA CGCGCGGAAG GGCGCTATCC GCTCTACGAA
ACGCAAACCA CGGCGCTCGG CGGTCCGGCC GGACCGGTCT GGCTGCTGCC GCTCGTCGAG
CCAGAGGAAG CAGAGGATGA CGAAGCATCC GAGGGCGATG GCCATCGCGA TACGCTGACC
CAGCCACGCA CGCAGAAAGG CGACTCCCTG CGTTACGAGG AAGGTCGCCG CGTGGCAGCC
TGGCTGCACT ATCTGCGCGA CCAGGTGCCC GTGAGGGAAG GCGATGGCAC TCGCCCGGCG
GGCTGGCGCG ACATGCATCT GCTGGTGCGA CGCAAGACCT TTCTGGCTGA TTACGAACGA
GCGATGCGCG AGGCCGGCAT CCCGTGCCTG AGCCCGCGCC GTGGCGGCTT GCTGACGACG
CTGGAAGCAC TCGATCTCTC AGCGCTCCTG GCGTTCCTGA TGACACCGGA ATCGGATCTC
GACCTCGCGC ATGTTCTCAA GAGCCCGCTC GTGGGCGCGA CTGACGACGA TCTGGTGCTG
CTGGCCATGA TGGAGGGCGA AGGTGGATGG TGGGCACGCA TCGAGGCGCT GGGACTGCCC
GAGCGCGTTT CCGATTCGCT GCGAACGGGT GTCGCGCGCT TGCGCGGCTG GCTGGCGCTC
GCGCCGCACA AGCCCGTGCA TGATCTGGTC GACCAGATCT ATCACCAGGG AGAGGTGCGT
CGCCGTTATG CCGAAGCCGC GCCTGCCGCC ATTCGCGAAC AGGTGCTGGC CAATCTCGAT
GCCTTCCTGA AGCTGTCGCT CGACCTTGAT GGCGGACGCT ATCCGAGCCT GCCCAAGTTC
ATCGATGAGC TGCAGGAAAT TCGGCGTGGT GACGAGGATG AAAGCCCCGA TGAGGGCGGC
ATGGGCGAAG GTGTCGAGGA TACCGAGGCG GAGTCAGACG ACGCCGCAGA CAATCAGCTC
GATGCCGTTC ATATTCTGAC GGTGCACGCG GCAAAGGGCC TCGAGGCGCC GTTCGTGATT
CTGCTCGATG CGAATCACAG CGATCCGGCG GCGGATCGTG GTGGCATTCT GGTCGACTGG
CCGCCGACAT CGGCGGTGCC ACGGCATTTT TCCGCCTACG GCAAGCGTGA CGAGCGCGGC
ATGGCTCGCG CGCCGCTGTT CGACGCCGAA GCGGCGCTGG CCGATCGCGA AAACTGGAAT
CTGCTCTACG TGGCGATGAC GCGCGCGCAG CAAGGCCTGC TGGTTAGCGG CATCAAGGGG
CGCGCGAGCA AGGCGGAGAA GGAAGATGCG CCAGGGGCGG AGATCGCCGG AAGCTGGTAC
GTGCGTCTGG CTGCGGCGGG TGTCGGTGAC GAGATCACGG CTTATCCCGA GACCGACGTC
GCGGCAGTCG ATACCCTGAC CGCCGCCAGC GAGCGCATCC GCTATACCGA TTTCCGGCTG
CGCTATCGCG ATGCGGCTGA CGACCGCTTG CCGATCGACG ATGCGGACGA CGAGGCCGAG
GGCATCGTGT TCGATGCCGA TGCCGCTGCA CATGGCGAAC TGGTGCACGC GCTGCTCGAA
CGTGTCTCGC GCTATCCCGA TGCGCATGGC AGCTTGCCCG ACGTGGAAAC GGTCTTGCGC
TGGTTCCCGC TGACTGGCGC GGGTGCGCCG AACGCGCGTG AGCGCTGGCG GCAGCAGGCC
GAGGCGGCCG TCGCGGACCT GCGCGCAATG CTTGAGGCCC CGGCACTGCG CGAACTGATG
TTCCCGGTGG ATGCCGTGTC GGCACGCAAT GAGGTGGAGC TTTATGACGG CCGCGGGCGG
TTGCTGCGAA TCGACCGGCT GGTGGAATTC GACGAGCGGG TCGTCATCAT CGACTACAAG
CTCAGGCTGT TGCCGCAGGA ACATGCGGGC TATCGCACGC AGCTCTTGCG CTACGCAGCG
GCGGTGGCGC CGATGTTTCC GGGCAAGCGG ATCGAGGCTG GCGTGGCCAC GGCGGCCGGA
GAATGGATCG ATGTGGAGCT TCTGCGTGCC TCGGCGTCAC AGGCGGTACC TATCGCCACG
ACGCAGCAGG GGTCATTGTT CTGA
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| Protein sequence | MTEVHAYLRD GQSVGEADFT RAACDPGRSV VVEACAGSGK TWLLVARLVR LLLAGAAPHE
ILAITFTRKA AEEMRERLLE VLSQLAGGTD EAVLTQLEMR GLSPDAARAA LPRARTLHAQ
VLASPGRMAI DTFHGWFGTL LRGAPLSSGI VPGASLREDA LRMKREAWAP FWRALAQPQY
ADLREAYEAL VDAIGDFQAR GLLDRMFHAR NEWFAFKESG DPATKLAQDL GDDATSDILV
DALCDDDWLE ECAQMALLLG RGGKTEQGHA SKIIDGLRAI RAWRDAGAAP GEAAANAFQL
LRAAFFTDAG KPRSLRRTTA LAKVCGSEGA VDELLDQHAE HCARLDEIAA RRCEAMVLAI
NLALYRLGDA LLERYQRHKG DQRAMDFADL EWLAAKLMAD EETATYLQVR LDARYRHLLL
DEFQDTNPLQ WRILQGWLAG YQGLGEKPTV FLVGDPKQSI YRFRRADARL FDAARVMLQD
GFGATVLRTN RTRRNRPEVL DWVNAVFDHA RAEGRYPLYE TQTTALGGPA GPVWLLPLVE
PEEAEDDEAS EGDGHRDTLT QPRTQKGDSL RYEEGRRVAA WLHYLRDQVP VREGDGTRPA
GWRDMHLLVR RKTFLADYER AMREAGIPCL SPRRGGLLTT LEALDLSALL AFLMTPESDL
DLAHVLKSPL VGATDDDLVL LAMMEGEGGW WARIEALGLP ERVSDSLRTG VARLRGWLAL
APHKPVHDLV DQIYHQGEVR RRYAEAAPAA IREQVLANLD AFLKLSLDLD GGRYPSLPKF
IDELQEIRRG DEDESPDEGG MGEGVEDTEA ESDDAADNQL DAVHILTVHA AKGLEAPFVI
LLDANHSDPA ADRGGILVDW PPTSAVPRHF SAYGKRDERG MARAPLFDAE AALADRENWN
LLYVAMTRAQ QGLLVSGIKG RASKAEKEDA PGAEIAGSWY VRLAAAGVGD EITAYPETDV
AAVDTLTAAS ERIRYTDFRL RYRDAADDRL PIDDADDEAE GIVFDADAAA HGELVHALLE
RVSRYPDAHG SLPDVETVLR WFPLTGAGAP NARERWRQQA EAAVADLRAM LEAPALRELM
FPVDAVSARN EVELYDGRGR LLRIDRLVEF DERVVIIDYK LRLLPQEHAG YRTQLLRYAA
AVAPMFPGKR IEAGVATAAG EWIDVELLRA SASQAVPIAT TQQGSLF
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