Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg2_0048 |
Symbol | |
ID | 6978757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
Kingdom | Bacteria |
Replicon accession | NC_011369 |
Strand | + |
Start bp | 48393 |
End bp | 49955 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643394759 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002279577 |
Protein GI | 209547660 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0373513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACTGT CCGCCAGTCT TTTCCTGCGC CAGAACCAAT CGCTGGTGAT GACACCGCAG CTGATGCAAT CCATCCAGCT GCTGCAGATG ACCCATGTCG AACTCACTCA GTTCATCGCC CAGGAAGTGG AGAAGAACCC GCTGCTCGAA TTTCCGTCGA ATGACGGCGA GGCGGGCGCA GAACGCGGCG AATCCGAGGA CGAGCCCTAT GGTCATTCCC CGGAGGATGC GGGCTCGGAC GACGGCTACG ACAACCGCAC CGACGCGCTC TCCAGCGACT GGTACGACAA TGGCGGCAGC GCCAGCACCA GCCGGCTGAA CGACGAGCTC GACGCCAACT ACACCAACGT CTATCCTGAC GACAGCGCGC CGCAGCGCCT CGATGCGCCC GAACTCGTCG GCCAGTGGAA ATCGATGCCG GGCAGCGGCG GCGAGGGCGC CGATTACGAT CTCGACGATT TCGTCGCCGG CCAGGTGTCG CTGCGCGATC ATCTCGCCCA GCAGATCCCC TTCGTCCTGC CCGACATGGC CGATCGGCTG ATTGCCCAGA ATTTCGTCGA TCAGCTCGAC GATGCCGGTT ATCTGCAAGT CGATCTCGTC GAGACCGGCG AGCGGCTGGG CACGAGCCTG ACTGCGGCCG AGCGTGTGCT TGCCGCCCTC CAGACGCTCG ATCCGCCCGG GGTTTTCGCC CGCAGCCTCT CGGAATGCCT GGCGATCCAG CTCAGGCAGA AGGACCGGTA CGACCCCGCC ATGCAGGCGC TGGTCGAAAA TCTCGAACTG CTGGCGCGGC GCGATTTTGC CACGCTGAAG CGGCTCTGCG GCGTCGACGA GGAAGACCTT CTCGATATGC TCGGCGAAAT CCGGCAGCTC AATCCCAAGC CCGGCAGCGG TTTCGAGACC GGCGTTTCCG AGGCGATCAT GCCCGATGTG GTCGTCCGGC CTTCCCTCGA TGGCGGCTGG CTGGTCGAGC TCAATCCGGA TACGCTGCCG CGCGTGCTCG TCAATCAGTC CTATTTTTCC CGGGTGACGA GGAATGGCGA CGATCACGCC TTCCTTTCCG AATGCTTGCA GAGCGCCAAC TGGCTGACGC GCAGCCTCGA CCAGCGGGCA AAAACCATCC TGAAGGTGGC AAGCGAGATC GTCCGCCAGC AGGATGCCTT CCTGCTGAAT GGCGTCGACC ACCTGCGCCC GCTGAACCTG AAGACGGTCG CCGAGGCGAT CAAGATGCAC GAATCCACCG TCAGCCGCGT CACCTCGAAC AAATACATGC TGACGCCGCG CGGCCTCTTC GAGCTCAAAT ATTTCTTCAC CGTCTCGATC AGCGCGGTTG CCGGCGGCGA CAGCCATTCG GCCGAGGCGG TGCGTCACAA GATCCGCGCG CTGATCATGC AGGAGAGCCC TGACGCGGTG CTTTCCGACG ACGATATCGT CGACATGCTG AAGAAGGGCG GTGTGGATCT CGCCCGCCGC ACGGTTGCCA AATACCGCGA GGCTATGAAC ATCGCCTCCT CAGTCCAGCG GCGGCGCGAA AAACGCGCGC TCGCCAAGGT CGCCGGTTTC TGA
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Protein sequence | MALSASLFLR QNQSLVMTPQ LMQSIQLLQM THVELTQFIA QEVEKNPLLE FPSNDGEAGA ERGESEDEPY GHSPEDAGSD DGYDNRTDAL SSDWYDNGGS ASTSRLNDEL DANYTNVYPD DSAPQRLDAP ELVGQWKSMP GSGGEGADYD LDDFVAGQVS LRDHLAQQIP FVLPDMADRL IAQNFVDQLD DAGYLQVDLV ETGERLGTSL TAAERVLAAL QTLDPPGVFA RSLSECLAIQ LRQKDRYDPA MQALVENLEL LARRDFATLK RLCGVDEEDL LDMLGEIRQL NPKPGSGFET GVSEAIMPDV VVRPSLDGGW LVELNPDTLP RVLVNQSYFS RVTRNGDDHA FLSECLQSAN WLTRSLDQRA KTILKVASEI VRQQDAFLLN GVDHLRPLNL KTVAEAIKMH ESTVSRVTSN KYMLTPRGLF ELKYFFTVSI SAVAGGDSHS AEAVRHKIRA LIMQESPDAV LSDDDIVDML KKGGVDLARR TVAKYREAMN IASSVQRRRE KRALAKVAGF
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