Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2312 |
Symbol | |
ID | 3964114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2535152 |
End bp | 2536552 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637917129 |
Product | pseudouridine synthase, Rsu |
Protein accession | YP_523561 |
Protein GI | 89901090 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.49516 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGCAG ACAGCTCCGA CACGCCAACA GAAGCAAAAG TGGACGCTCA GCAACAAGCT GATACGCCGA TAGTGGAAAC AAATGTCACG CCAACGGCCG AGACGTGCAT TGACGACAAA TCAAAGTCGG AACGAGCAAC GCAGACCCCC GTGGCAGGGC AACAGAAGTC AGTGCCGGTG GCTTCGGAGA ATCGTTTTGA GGATGTGGTG TCTGGGCAAT TTGACGCAGA TGAGGAGTGT GCAGACACGA TTGCTCTCAA GCGGGTACTG GCGCCCTTGG CCGAAACGCC CAAGTTGCAT AAAGTCCTGG CTCAGGCTGG GATGGGGTCG CGGCTGGAAA TGGAACAGTT GATCATGGAA GGCCGCATTA CCGTCAACAA TGAACCAGCG CATATTGGGC AGCGTATTCA GTTTGGTGAT CACGTTAAGG TTAATGGCAA GCCAATCAGG TTTCGAATTG ATGCGCCGCC TGCACGGGTG ATTGCGTATC ACAAACCGGT CGGAGAAGTA GTCACCCATG ACGATCCGCA GAATCGCCCG ACCGTTTTTC GCCGACTGCC CAAGTTGTTT CAGGGTAAGT GGCAATCGGT GGGGCGACTT GATCTCAACA CCGAAGGCTT GCTGCTGTTC ACCAGTTCGG GGGAATTGGC CAATAACCTG ATGCATCCCC GGTTTGGTCT GGAGCGGGAA TACGCGGTCC GCGTGCTGGG GGCGTTGAAC AAGGATGAGA AGCAACGTTT GCTTGATGGT GTCAAGCTGG ATGATGGAGT TGCCCAATTC GGATCGATTG AGGCGGGTGG GGGTGAAGGT GCCAACTGTT GGTACCGGGT CACGATCGCT GAGGGGCGTA ACCGTGAGGT TCGCCGCATG TTTGAGGCGG TCGGTCACGC GGTGAGTCGA TTGATCCGAA TCCGTTATGG CGCCATGATG CTGCCGCGCG GTCTCAAGCG TGGTGCCTGG ATGGAACTCG ATGAGAGCGA TATCAAGTCA CTGATGCAGG CCGCGGGGCC GCGAAGTTCC AGTGCACAGG GGAATGAGGC TGGCGAGGGC GGCGTAGATG TTTCGCGCCG TGAAGGCGCC GAGCAGGGGC CTGGGTCACG AAACCGGCGC CGGGGCGCCC GCGGCAATGG TGTGCGCAAC ACAGGAAACG GTCAACGCAA TGCGACAGTG GGTGGTGCGC CAAAGAGTGG CGCAGGTTTT TCGCAAGGCT CGGGGCAGTC GCGGAAGAAG CAGGGGCAGA CCGGGGACCG TCAAGCTGGT GCAAGTCAAC CAGATCCAAT GAAGACGGCC TTTGGTTACA TTGGAGCGGA CAGTTTTACC CGGCAACGGC AGGATCTGGG GCAACGTGGC GGCGGCAATG GTTCGGGCGG CGGACAACGT CGCGGTGGAC GGAGCCGCTA G
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Protein sequence | MTADSSDTPT EAKVDAQQQA DTPIVETNVT PTAETCIDDK SKSERATQTP VAGQQKSVPV ASENRFEDVV SGQFDADEEC ADTIALKRVL APLAETPKLH KVLAQAGMGS RLEMEQLIME GRITVNNEPA HIGQRIQFGD HVKVNGKPIR FRIDAPPARV IAYHKPVGEV VTHDDPQNRP TVFRRLPKLF QGKWQSVGRL DLNTEGLLLF TSSGELANNL MHPRFGLERE YAVRVLGALN KDEKQRLLDG VKLDDGVAQF GSIEAGGGEG ANCWYRVTIA EGRNREVRRM FEAVGHAVSR LIRIRYGAMM LPRGLKRGAW MELDESDIKS LMQAAGPRSS SAQGNEAGEG GVDVSRREGA EQGPGSRNRR RGARGNGVRN TGNGQRNATV GGAPKSGAGF SQGSGQSRKK QGQTGDRQAG ASQPDPMKTA FGYIGADSFT RQRQDLGQRG GGNGSGGGQR RGGRSR
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