Gene Rfer_2312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2312 
Symbol 
ID3964114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp2535152 
End bp2536552 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content59% 
IMG OID637917129 
Productpseudouridine synthase, Rsu 
Protein accessionYP_523561 
Protein GI89901090 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.49516 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGCAG ACAGCTCCGA CACGCCAACA GAAGCAAAAG TGGACGCTCA GCAACAAGCT 
GATACGCCGA TAGTGGAAAC AAATGTCACG CCAACGGCCG AGACGTGCAT TGACGACAAA
TCAAAGTCGG AACGAGCAAC GCAGACCCCC GTGGCAGGGC AACAGAAGTC AGTGCCGGTG
GCTTCGGAGA ATCGTTTTGA GGATGTGGTG TCTGGGCAAT TTGACGCAGA TGAGGAGTGT
GCAGACACGA TTGCTCTCAA GCGGGTACTG GCGCCCTTGG CCGAAACGCC CAAGTTGCAT
AAAGTCCTGG CTCAGGCTGG GATGGGGTCG CGGCTGGAAA TGGAACAGTT GATCATGGAA
GGCCGCATTA CCGTCAACAA TGAACCAGCG CATATTGGGC AGCGTATTCA GTTTGGTGAT
CACGTTAAGG TTAATGGCAA GCCAATCAGG TTTCGAATTG ATGCGCCGCC TGCACGGGTG
ATTGCGTATC ACAAACCGGT CGGAGAAGTA GTCACCCATG ACGATCCGCA GAATCGCCCG
ACCGTTTTTC GCCGACTGCC CAAGTTGTTT CAGGGTAAGT GGCAATCGGT GGGGCGACTT
GATCTCAACA CCGAAGGCTT GCTGCTGTTC ACCAGTTCGG GGGAATTGGC CAATAACCTG
ATGCATCCCC GGTTTGGTCT GGAGCGGGAA TACGCGGTCC GCGTGCTGGG GGCGTTGAAC
AAGGATGAGA AGCAACGTTT GCTTGATGGT GTCAAGCTGG ATGATGGAGT TGCCCAATTC
GGATCGATTG AGGCGGGTGG GGGTGAAGGT GCCAACTGTT GGTACCGGGT CACGATCGCT
GAGGGGCGTA ACCGTGAGGT TCGCCGCATG TTTGAGGCGG TCGGTCACGC GGTGAGTCGA
TTGATCCGAA TCCGTTATGG CGCCATGATG CTGCCGCGCG GTCTCAAGCG TGGTGCCTGG
ATGGAACTCG ATGAGAGCGA TATCAAGTCA CTGATGCAGG CCGCGGGGCC GCGAAGTTCC
AGTGCACAGG GGAATGAGGC TGGCGAGGGC GGCGTAGATG TTTCGCGCCG TGAAGGCGCC
GAGCAGGGGC CTGGGTCACG AAACCGGCGC CGGGGCGCCC GCGGCAATGG TGTGCGCAAC
ACAGGAAACG GTCAACGCAA TGCGACAGTG GGTGGTGCGC CAAAGAGTGG CGCAGGTTTT
TCGCAAGGCT CGGGGCAGTC GCGGAAGAAG CAGGGGCAGA CCGGGGACCG TCAAGCTGGT
GCAAGTCAAC CAGATCCAAT GAAGACGGCC TTTGGTTACA TTGGAGCGGA CAGTTTTACC
CGGCAACGGC AGGATCTGGG GCAACGTGGC GGCGGCAATG GTTCGGGCGG CGGACAACGT
CGCGGTGGAC GGAGCCGCTA G
 
Protein sequence
MTADSSDTPT EAKVDAQQQA DTPIVETNVT PTAETCIDDK SKSERATQTP VAGQQKSVPV 
ASENRFEDVV SGQFDADEEC ADTIALKRVL APLAETPKLH KVLAQAGMGS RLEMEQLIME
GRITVNNEPA HIGQRIQFGD HVKVNGKPIR FRIDAPPARV IAYHKPVGEV VTHDDPQNRP
TVFRRLPKLF QGKWQSVGRL DLNTEGLLLF TSSGELANNL MHPRFGLERE YAVRVLGALN
KDEKQRLLDG VKLDDGVAQF GSIEAGGGEG ANCWYRVTIA EGRNREVRRM FEAVGHAVSR
LIRIRYGAMM LPRGLKRGAW MELDESDIKS LMQAAGPRSS SAQGNEAGEG GVDVSRREGA
EQGPGSRNRR RGARGNGVRN TGNGQRNATV GGAPKSGAGF SQGSGQSRKK QGQTGDRQAG
ASQPDPMKTA FGYIGADSFT RQRQDLGQRG GGNGSGGGQR RGGRSR