| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3241 |
|---|
| Symbol | |
|---|
| ID | 5540739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4210611 |
|---|
| End bp | 4212047 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895362 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001433313 |
|---|
| Protein GI | 156743184 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTAC TGAAGCGAAT TGGCGGGTCG CAACCGCAAT CAACGTCCGA ACCTGCTGTG
CCGGTCAGCG CTCCGGCGCC GTCTGACGCA GCCAACCATA CGCCAGCTTC GCGGACGGCG
CCATCGACCG TTTCCTCCGG CAGCGAGATG TCGCAGCAAC GCATGCTGGA ATTGTCGCTC
TGGATCGTTG ATCGCATTCT CAGTTCGCTC GGCAATCAGC AGGAACTCAA ACGCTCCCCC
GAAATGGAGC GTCAACTGCA AGAAAAGTTC ACCCTCGCCT ACCGGCAGAG CGGCGTCAAC
CTGACCGACG ATCAGACCAA ACACCTCTAC GATATGGTCA TGGACGAGTT GTTCGGTTTT
GGTCCCATCG AGCCGCTGCT CCGTGACGAT AGCATCACCG AGGTGATGGT CAATGGACCG
CGCGCCGTCT ACGTCGAGCA AAAAGGCAAG ATCACGTTGA CCCAGGTGCG GTTTGCCAAC
GATGAGCATG TGCTGAAAGT CATCGACCGC ATCATTCGCC CGTTGGGACG ACGCATTGAC
CGCAAATGGC CGATGGTCGA TGCGCGTCTG CCCGATGGTT CGCGCGTCAA TGCGATCATT
CCACCCTGCG CCATCGATGG ACCATCGATT ACGATCCGCA AATTTGCCAA GAAAAAACTG
ACGGTCGAAG ATCTGATCCG CTTCGGTTCG ATGACGCCTG AAATGGCGGA GTTTCTGCGC
GCGTGCGTCG TCAGTCGCTT GAATATCATC GTTTCCGGCG GCACCGGCTC CGGCAAGACG
ACGCTCCTGA ACGTGTTATC GAACTTCATC CCTCCCGATG AGCGCATCGT TACGATTGAA
GACAGCGCCG AACTGAAACT CGGGCAGGAT CACGTGGTGC GCCTGGAGTC GAAACCGCCG
GAGATCGACG GCACCGGGCG CGTGACGATC AACGACCTGG TGATCAACTC GCTGCGTATG
CGCCCGGAAC GGATCGTCAT AGGTGAGTGC CGCGGCGGCG AAACCATGGC CATGCTCCAG
GCAATGAACA CTGGTCACGA TGGATCGCTG TCGACCCTCC ACGCCAACTC GCCGCGCGAC
GCCATTGCGC GTATGGAGAC AATGGCGATG ATGGCGGGGA TGGATATGCC GCTCCGGGTG
ATCCGCGAAC AGATTGCATC CGCCATCGAC CTGATTGTGC AGCAGACGCG CCTGGAAGAC
GGCAGTCGCA AGATTTCGTA CATTACTGAG GTGCAGGGTA TGGAAGGTGA TGTCGTGGTG
TTGCAGGATA TCTTCCTGCT GCACATTCTC GGCAAAACCC CGGAGGGCAA GATTATCAGC
GAGTTGCGAC CTACCGGCAC CCGTCCGCGT TTCACTGCGC GTCTCGAGGC GCATGGCTTC
AAACTGCCGC CATCGATCTT CGGCGCAACT GTTCCAGGGC AGAAACGGCC GTGGTGA
|
|---|
| Protein sequence | MSLLKRIGGS QPQSTSEPAV PVSAPAPSDA ANHTPASRTA PSTVSSGSEM SQQRMLELSL
WIVDRILSSL GNQQELKRSP EMERQLQEKF TLAYRQSGVN LTDDQTKHLY DMVMDELFGF
GPIEPLLRDD SITEVMVNGP RAVYVEQKGK ITLTQVRFAN DEHVLKVIDR IIRPLGRRID
RKWPMVDARL PDGSRVNAII PPCAIDGPSI TIRKFAKKKL TVEDLIRFGS MTPEMAEFLR
ACVVSRLNII VSGGTGSGKT TLLNVLSNFI PPDERIVTIE DSAELKLGQD HVVRLESKPP
EIDGTGRVTI NDLVINSLRM RPERIVIGEC RGGETMAMLQ AMNTGHDGSL STLHANSPRD
AIARMETMAM MAGMDMPLRV IREQIASAID LIVQQTRLED GSRKISYITE VQGMEGDVVV
LQDIFLLHIL GKTPEGKIIS ELRPTGTRPR FTARLEAHGF KLPPSIFGAT VPGQKRPW
|
|---|
| |