Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3151 |
Symbol | |
ID | 5540649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4086301 |
End bp | 4087902 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895272 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001433223 |
Protein GI | 156743094 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATGGA TAACGCGCTG GATGAGCATA TGCTGTGTGG TATTGCTGAC CGCCTGTAGC ACAACGCAGG CATTGCAGGA GCCGCCAACT CCTACCCCCC TGCCGCCCGA TCCGGCGCTC GAACGCCCCA CGTACACGGT TCAGCGCGGT GCTATCGAGC AGGTGTTCAC GGTCACTGCC CGCGCAACGC CGGTCGATAT GGCGCGGCTG GCATTCCGAC GTGATGGGCG CGTCAACGTC GTGAATGTCA GTCGTGGCGA TGTCGTCAAG GAAGGCGATG TTTTGGCGGA ACTTCAGCAG GAGGAGGCGC TCGACGAGTT GCGTCGCGCC GAGGACGATC TGGCGCAGGC GCGACGCGAC CTGGAGAGTG CGCAGCTGGC AAAGGAGAAA CGGATCAAGG AACGCGAACT CGATGTGGAT CGCGCCAGGC GCGAACTCGA ACGATTGTTG CCTGGCGGTG AGGCGGATCT GTTCAAGGAA TTGCAGGAAC GCCTCGAAGC GGCGCAGCGC GAGTTGCGCA CCACACGCGA TGATGCGTCG TGGTCGAAAA CTTCAGCGGA CGAAGCGCTA CGCGACAGCG CCGAAGCGCT TTCCGACACC CAGAAGGCGT ATAGTGTCGC CTACTGGAAC TGGGACTGGG TGCAGCGCTA TGGGACCGAC CCGGAGAATC CATTTATCAA GAATGAGGCC GGGGTGCTGG TTCCCAATCG CCTCACCGAG AAACAAAAGG AAGAGTTTCG TATGAAACTG GTGCAGGCGG AACGCGCATT ACGCGACGCC GAACGCTCGG TCGAGCAGGC GCAGCGCGCC CGTGATCGCG CATATGAAGA TGAAGTCGTC AAAATTTACG AGGCGGAGAA GAAAGTCGAG GAAGCGCAGC GCGCGCTTGA GACCCTGCTC CAGGGCAAGA ACAAAGCAAT CGAAGACGCC CAACTCGCTC TCGAGCGGGC GCAGGTTGCA CTGGAGGAAG CGCGCAACGA GACGCTCAAC AGCGCACTCC GCGCCGTGGA GAACGCCGAG CGCGCCCTGG AAAAAGCACG CCGCCGCGTC GATGACGGGC GTGTCATAGC GCCGCAGGAT GGAACCGTGC TGGCGGTCGC TATCGAGCCA GGAGCAACAG TGACCGCCTT CGAGCCGGTG ATCGAGATTG CCGATCCATC GAACCTGGAG TTTGCCGCAA CTCTGAGCGC GCAGCAGATG CGGCTGCTCT CCGAAGGTCA GAGTGTCGAG ATCCGCCTGC TATCGCGCCC CGACCTGGTG ATCCCCGGCG TTATTCGACG CATGCCGGCG CCTTACGGGT CGGGCGGAAG CGGCGCCGTC CAGGATCGCG ACGTCACCAC GCGCTTTCAA ATAGTCGATG CGCGCGGACA AACATTCGAG GCTGGCGTGA CCGTTGCGCG AGTCAGCATC GTGCTGGAGC GCAAAGACAA TGTCCTCTGG CTGCCGCCAG AGGCGATCCG GTCATTTGAG GGTCGCCGCT TCGTCATTGT CCGTGAAGGG GAGCGTGAAC GCCGTGTGAC CGTGCGGGTC GGCATCGAAA CCGATGAGCG GGTCGAGATT CTCGAGGGCC TGAACGAAGG CGATATTGTC GTTGGATCCT GA
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Protein sequence | MRWITRWMSI CCVVLLTACS TTQALQEPPT PTPLPPDPAL ERPTYTVQRG AIEQVFTVTA RATPVDMARL AFRRDGRVNV VNVSRGDVVK EGDVLAELQQ EEALDELRRA EDDLAQARRD LESAQLAKEK RIKERELDVD RARRELERLL PGGEADLFKE LQERLEAAQR ELRTTRDDAS WSKTSADEAL RDSAEALSDT QKAYSVAYWN WDWVQRYGTD PENPFIKNEA GVLVPNRLTE KQKEEFRMKL VQAERALRDA ERSVEQAQRA RDRAYEDEVV KIYEAEKKVE EAQRALETLL QGKNKAIEDA QLALERAQVA LEEARNETLN SALRAVENAE RALEKARRRV DDGRVIAPQD GTVLAVAIEP GATVTAFEPV IEIADPSNLE FAATLSAQQM RLLSEGQSVE IRLLSRPDLV IPGVIRRMPA PYGSGGSGAV QDRDVTTRFQ IVDARGQTFE AGVTVARVSI VLERKDNVLW LPPEAIRSFE GRRFVIVREG ERERRVTVRV GIETDERVEI LEGLNEGDIV VGS
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