| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2988 |
|---|
| Symbol | |
|---|
| ID | 5540480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3874745 |
|---|
| End bp | 3876472 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895106 |
|---|
| Product | polymorphic outer membrane protein |
|---|
| Protein accession | YP_001433063 |
|---|
| Protein GI | 156742934 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0583035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000382857 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATAC TGCTCATCGT GTTCCTGGTT ATTGTTCCCC TCCTTCTTCC GGCAACGCCA
GCGCGCGCCG TCGGCGTCGT CGGCGATGGA ACGCCGGGGA GTTGCACGCG CGATGCACTG
GCGGCAGCGC TCGCCAGCGG CGGTGAGATT CGCTTCAACT GTGGCGGCGC GCCGGTGACG
ATTCCTGTCA CCACAACGCT CGACATCCGC ACAGCAGCAG TCATCGATGG CGCAGGGGTG
ATCACCCTCG ACGGGCAGGG AACGACTCGC ATTCTGTATG TCAACAAACT CAGCGCCGGA
ACGAAACTGG CGCTCCACAA CATCAGGCTG ATCAACGGAA AATCGAGCGG TTTCGAGCCA
TCGTTCGGCG GCTGTGTCTA TTCCCGTCAG AGCGCCGTCG AACTCAACAA TGTCGTCTTT
GACGGATGCC GCGCAGGGAA CGGCGCCGCG CTCTATGTGT ACGGCGGTAT GCTGACGATT
GACCAGAGCA CCTTCGACGG TAATCAGGCA AGTGATGGCG GCGCGATCTA TGCACTTCAG
GGCGGGCGTG TTGTCGTGCG CAACTCATCG TTTACCGCCA ATACCGCCAC CGGCGACGGC
GGCGCGCTGT TGATGGACAA TTCGTCGCTC GAGGTTTCCA ACTCGCGTTT CGAGGCGAAT
AAGGCGCTGG GAACGCAATC TCAGCCGAAT ATTGGCTTAG GCGGCGCAAT CTACGGGAAC
AATCCCGGCG CTGCTATCAC GATTGTAAAC AGCCAGTTTC GCCAAAACTA TGCGCGATTG
CAGGGTGGCG CCGTGTTTGC CGATTATAAC GCGACCCTCA CGATCACCAA CAGCACGTTT
ACCAACAACC GATCAGACTC GCAAGGCGGA GCAGTAGGAA CCTGGAAGAC GCAGGCGTTG
CTTTCCGCCT GTATCTTTAC CGGCAATTCC TCCGGAGGCG GTGGCGGCGC GGTATTGAGC
GGCGAAGCCA CGACCATGTC CGTCAACCGG AGCGTTTTCA CTGCAAACAT TGCCGGGCGT
GACGGCGGCG CACTCTACAA CTACACCGGA CCGCTCACCA TCAACGACTC CTCCTTTGAC
GCCAACCGCG CCGGAACCGA TGGCAGAGGC GACACCCGCG GCGGCGCCAT CGTCAATTAT
CGCGCGCCAA TGAGCATCAA TGCCAGCACA TTCACCGGCA ATATCGTCGA GGGGAGGAAC
GGATTCGGCG GCGCGATCGG CAATGCGGGC AGTGCGACCA TCATCAATAG CACGTTGTAC
GACAATGCCG CAGAGTATGG CGGGGCAATC TACGGACTCC GTGACACACG CATGGTCAAT
ACGACCATCG TGCGCAATCG GGGGACGAAT GGCGCCAATC TGAACTGGGA ACAAACCACC
ACGATGACTC TCAAGAATAC GCTGATTGTT CACAGCGGCG ACGGGCGTAG CTGCCGTCGC
GCCGTATCAA CCGATGAAGG CGGCAATGTG CAGGAAGGCG ACACCAACTG CTTCCCCGGT
CAACCGGCGG TATCGCTGGG GCTGGACGCC CCTGCAATGC ACGGCGGACC CACGTTCACG
ATCGCGCTGC CGTCTGGCAG CCCGGCGATA GACGCCGGAC GCGACTGCCC ACCCTCTGAT
CAGCGTGGGT TTCCGCGCGT CGGCGCCTGC GACAGCGGGT CCTTCGAGTT CGGCAGCATC
GCACCCAACC TGCGCGAAGC AGCGTTTCTG CCCTTTGTCT CACGCTGA
|
|---|
| Protein sequence | MRILLIVFLV IVPLLLPATP ARAVGVVGDG TPGSCTRDAL AAALASGGEI RFNCGGAPVT
IPVTTTLDIR TAAVIDGAGV ITLDGQGTTR ILYVNKLSAG TKLALHNIRL INGKSSGFEP
SFGGCVYSRQ SAVELNNVVF DGCRAGNGAA LYVYGGMLTI DQSTFDGNQA SDGGAIYALQ
GGRVVVRNSS FTANTATGDG GALLMDNSSL EVSNSRFEAN KALGTQSQPN IGLGGAIYGN
NPGAAITIVN SQFRQNYARL QGGAVFADYN ATLTITNSTF TNNRSDSQGG AVGTWKTQAL
LSACIFTGNS SGGGGGAVLS GEATTMSVNR SVFTANIAGR DGGALYNYTG PLTINDSSFD
ANRAGTDGRG DTRGGAIVNY RAPMSINAST FTGNIVEGRN GFGGAIGNAG SATIINSTLY
DNAAEYGGAI YGLRDTRMVN TTIVRNRGTN GANLNWEQTT TMTLKNTLIV HSGDGRSCRR
AVSTDEGGNV QEGDTNCFPG QPAVSLGLDA PAMHGGPTFT IALPSGSPAI DAGRDCPPSD
QRGFPRVGAC DSGSFEFGSI APNLREAAFL PFVSR
|
|---|
| |