Gene RPD_3999 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3999 
Symbol 
ID4024516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4445197 
End bp4446294 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content65% 
IMG OID637964202 
ProductGTP-dependent nucleic acid-binding protein EngD 
Protein accessionYP_571119 
Protein GI91978460 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0012] Predicted GTPase, probable translation factor 
TIGRFAM ID[TIGR00092] GTP-binding protein YchF 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTCA AATGCGGGAT CGTCGGACTG CCGAATGTCG GCAAGTCGAC GCTGTTCAAT 
GCGCTGACCG AGACCGCGGC GGCGCAGGCG GCCAACTATC CGTTCTGCAC GATCGAGCCG
AATGTCGGCG AGGTCGCGGT TCCGGATCCG CGGCTCGACA AGCTCGCCGA GGTCGGCAAG
TCGCAGCAGA TCATTCCGAC GCGGCTGACC TTCGTCGACA TCGCCGGTCT GGTGAAGGGC
GCCTCCAAGG GTGAAGGCCT CGGCAATCAG TTCCTCGCCA CCATCCGCGA GGTCGACGCG
ATCGCCCATG TGGTGCGCTG CTTCGAAGAC GGCGACATCA CCCATGTCGA AGGCCGGGTC
GCGCCGATCG CCGACATCGA GACGATCGAG ACCGAGCTGA TGCTCGCCGA TCTCGACAGC
CTCGAGAAGC GCGTCGACAA TCTGACCAAG AAGGCCAAGG GCAACGACAA GGACGCCAAG
GAGCAGCTCG AGCTGGTCAA CCGCGCGCTG ACGCTGCTGC GCGAGGGCAA GCCGGCGCGC
TTCCTCGAGC GCAAGCCGGA GGAGGAACGC GCGTTCCGGA TGCTCGGTCT GCTGACCTCG
AAGCCGGTTC TGTACGTCTG CAACGTCGAG GAAGGCTCAG CCGCCGAGGG CAACAGCTTC
TCGGAGCAGG TGATGGCGCG CGCCAAGGAA GAAGGCGCGG TCGCGGTGGT GATCTCGGCC
AAGATCGAAT CCGAGATCGC GACGCTGTCG CGCGAGGAAC GCGTCGATTT TCTCGACACC
CTCGGGCTGC ACGAGGCCGG CCTCGACCGG CTGATCCGCG CCGGCTACGA GCTGTTGCAC
CTGATCACCT ATTTCACGGT CGGCCCGAAG GAAGCCCGCG CCTGGACCAT CACCAAGGGA
ACCAAGGCGC CGCAGGCCGC CGCGGTGATC CACACCGATT TCGAGAAGGG CTTCATCCGC
GCCGAGACAA TCGCCTATGA CGACTATGTC ACGCTCGGCG GCGAAGCCGG CGCTCGCGAC
GGCGGCAAGC TGCGGCTCGA AGGCAAGGAA TACGTCGTCG CCGACGGCGA CGTGATGCAT
TTCCGCTTCA ATACGTGA
 
Protein sequence
MGFKCGIVGL PNVGKSTLFN ALTETAAAQA ANYPFCTIEP NVGEVAVPDP RLDKLAEVGK 
SQQIIPTRLT FVDIAGLVKG ASKGEGLGNQ FLATIREVDA IAHVVRCFED GDITHVEGRV
APIADIETIE TELMLADLDS LEKRVDNLTK KAKGNDKDAK EQLELVNRAL TLLREGKPAR
FLERKPEEER AFRMLGLLTS KPVLYVCNVE EGSAAEGNSF SEQVMARAKE EGAVAVVISA
KIESEIATLS REERVDFLDT LGLHEAGLDR LIRAGYELLH LITYFTVGPK EARAWTITKG
TKAPQAAAVI HTDFEKGFIR AETIAYDDYV TLGGEAGARD GGKLRLEGKE YVVADGDVMH
FRFNT