Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3396 |
Symbol | murD |
ID | 4023908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3773615 |
End bp | 3775027 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637963601 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_570521 |
Protein GI | 91977862 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.291122 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCCG TAACCTCCTT CGCCGGGCAG TCCGTGGCGG TGTTCGGGCT CGGCGGGTCG GGGCTGGCGA GCTGCCACGC GCTGCGCGCC GGCGGCGCCG AAGTGATCGC ATGCGACGAC AATCTCGACC GCGTGGTGGA AGCGACGCAG GCAAATTTCA TCACCGCTGA CCTGCGCAGT TTGCCGTGGG CCAATTTCGC TGCGCTGATC CTGACGCCCG GCGTGCCGCT GACGCATCCG ACGCCGCATT GGAGCGTCCT GAAGGCACGC GAGGCCGGCG TCGAAGTGAT CGGCGATGTC GAGCTGTTCT GCCGCGAACG GCGGCGGCAT GCGCCGGACT CGCCGTTCGT CGCCATCACC GGCACCAACG GCAAGTCGAC CACCACCGCG CTGATCGCGC ATCTGATGCG CGAGGCCGGT TACGACACCC AGATGGGCGG CAATATCGGC ACCGCGATTC TGTCGCTGGA GCCGCCGCGT AGCGGCCGCG TCCATGTGAT CGAGATGTCG TCCTACCAGA TCGATCTGAC GCCCTCGCTC GCTCCCACCG TCGGTATCCT GCTCAACGTC ACCGAAGACC ACATCGATCG CCACGGCACC ATCGAGCACT ACGCCGCGGT GAAGGAGCGG CTGGTCGCCG GCGTGCAGGA CGGCGGCACG GCGATCATCG GCGTCGATGA CGGCTTCGGC CGCGACGCCG CCGACCGGCT GGAGCGCGCC GGCAAGCAGG TGGTGCGGAT TTCGGTGAAG CAACCGCTGG CCTCCGGCAT CACCGCCGAT CATGAGACCA TTCGCAGCTC GGCCGGCGGC GCTTCACGCG AGATCGCGCG GCTCGGCGGC ATCGGTTCGC TGCGCGGCCT GCACAACGCC CAGAACGCCG CCGCGGCGTC GGCGGCTGCA TTGGCGCTCG GCGTCAGCGC CGATGCGTTG CAGAAGGGGC TGCGCAGCTT CCCGGGCCTC GCGCACCGGA TGGAGCAGGT CGGCCGGCAA TCGAGCGGTG AGGGCGCCAC GCTGTTCGTC AACGATTCCA AGGGCACCAA CGCCGACGCC ACCGCCAAGG CGCTGTCGTC GTTCGGCGAG ATCTTCTGGA TCGCCGGCGG CAAGCCGAAG ACCGGTGGCA TCGAAAGCCT CGCCGAGTAC TTCCCGCGCA TCCGCAAGGC GTATCTGATC GGCGAAGCGG CCGAGGAATT TGCCGCGACG CTGGAGGGAA AGGTCGCTTA CGAGATCAGC GAGACGCTGG ACAACGCCGT GGCGGCTGCG GCGCGCGATG CAGCGGCATC GGGATTGGCC GAGCCCGTGG TGCTGCTATC GCCGGCCTGT GCTTCGTTCG ACCAGTTCCG CAATTTCGAG ATCCGCGGCA CCAGGTTCCG CGAACTGGTG ACGGCACTGG ACGGTGTGAA ACCTGTGGCG TGA
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Protein sequence | MIPVTSFAGQ SVAVFGLGGS GLASCHALRA GGAEVIACDD NLDRVVEATQ ANFITADLRS LPWANFAALI LTPGVPLTHP TPHWSVLKAR EAGVEVIGDV ELFCRERRRH APDSPFVAIT GTNGKSTTTA LIAHLMREAG YDTQMGGNIG TAILSLEPPR SGRVHVIEMS SYQIDLTPSL APTVGILLNV TEDHIDRHGT IEHYAAVKER LVAGVQDGGT AIIGVDDGFG RDAADRLERA GKQVVRISVK QPLASGITAD HETIRSSAGG ASREIARLGG IGSLRGLHNA QNAAAASAAA LALGVSADAL QKGLRSFPGL AHRMEQVGRQ SSGEGATLFV NDSKGTNADA TAKALSSFGE IFWIAGGKPK TGGIESLAEY FPRIRKAYLI GEAAEEFAAT LEGKVAYEIS ETLDNAVAAA ARDAAASGLA EPVVLLSPAC ASFDQFRNFE IRGTRFRELV TALDGVKPVA
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