| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3004 |
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| Symbol | |
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| ID | 4023507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3348891 |
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| End bp | 3350156 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963203 |
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| Product | major facilitator transporter |
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| Protein accession | YP_570131 |
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| Protein GI | 91977472 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.42057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGACG AGGAGCAACC TCCCGGGACG ATCGCGCCGC TCCCGGGCGC GCGCCCCGCC
GCGGTCGGCT TCATCTTCGT CACCATCCTG CTCGATATGC TGAGCGTCGG CATGATCCTG
CCGATCCTGC CGAAGCTGAT CGAGAGTTTT TCCGACAACA ACACCGCGGA CGCGGCGCGA
ATCTACGGCG TGTTCGGCAC AGCGTGGGCG CTGATGCAGT TCGTCGCGTC GCCGGTGCTG
GGCGGGCTGT CCGATCGTTT CGGCCGCCGC CCGGTGATCC TGCTGTCCAA TCTCGGTCTC
GGTCTCGACT ACATCCTGAT GGCGCTGGCG CCGACGCTGA GCTGGCTGTT CATCGGCCGG
GTGATCTCCG GCATCACGTC GGCGAGTATT TCGACCTCGT TCGCCTATAT CGCCGACGTC
ACGCCGGCGG AGAAGCGCGC GGCCGTGTTC GGCAAGGTCG GCGCCGCGTT CGGTCTCGGC
TTCATCTTCG GCCCGGCGAT CGGCGGTTTG CTCGGTGGTA TCGATCCGCG ACTGCCGTTC
TGGGTGGCGG CTGGGCTCAG CCTGTGCAAC GCGCTGTACG GTCTGTTCGT GCTGCCGGAA
TCGCTGCCGC CGGAGCGGCG CTCGCCGTTT CGCTGGAGGT CCGCCAATCC GGTCGGCGCT
GTGCGGCTGC TGGGCTCGAA TGCCCGGCTG GCGGCGATGG CTCTGGTCGA GTTCTGCGCC
GAGGTGGCGC ATGTCGCGCT GCCGGCGATC TTCGTGTTGT ACAGCACCTA CCGTTACGGC
TGGGACCAGA CCACGGTCGG GCTCGCGCTC GCTTTCGTCG GGGTCTGCAC CGCGATCGTG
CAGGGCGGCT TGGTGGGGCC TGCCGTGAAG CGACTCGGCG AACAAAGGGC CCAGATCATC
GGCTATGGCG GCGGCGCGCT AGGCTTTCTG ATCTACGCGC TGGCGCCGAC CGGAGCGCTG
TTCTGGATCG GCATCCCGGT GATGACGCTG TGGGGCATCG CAGGGCCGGC GACCTCCGGC
ATGATGACGC GGCTGGTGTC GCCGGACCAG CAGGGCCAGT TGCAGGGCGC CATCACCAGC
CTCAAGAGCA TCGCCGAACT GATCGGGCCG TTCCTGTTCA CGCTGATCTT CGCGTATTTC
ATTGGAGGCA ACGCGCCGCT GGCTCTTCCC GGGGCGCCGT TCCTGCTCGC AGGCCTGCTG
CTGATGGTCT CGGCGCTGAT CGCCGCGTCC ACCAATGAAG CGACCAAACA GGCCGGCACC
GGCTAG
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| Protein sequence | MTDEEQPPGT IAPLPGARPA AVGFIFVTIL LDMLSVGMIL PILPKLIESF SDNNTADAAR
IYGVFGTAWA LMQFVASPVL GGLSDRFGRR PVILLSNLGL GLDYILMALA PTLSWLFIGR
VISGITSASI STSFAYIADV TPAEKRAAVF GKVGAAFGLG FIFGPAIGGL LGGIDPRLPF
WVAAGLSLCN ALYGLFVLPE SLPPERRSPF RWRSANPVGA VRLLGSNARL AAMALVEFCA
EVAHVALPAI FVLYSTYRYG WDQTTVGLAL AFVGVCTAIV QGGLVGPAVK RLGEQRAQII
GYGGGALGFL IYALAPTGAL FWIGIPVMTL WGIAGPATSG MMTRLVSPDQ QGQLQGAITS
LKSIAELIGP FLFTLIFAYF IGGNAPLALP GAPFLLAGLL LMVSALIAAS TNEATKQAGT
G
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