Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0202 |
Symbol | |
ID | 4020660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 225807 |
End bp | 229286 |
Gene Length | 3480 bp |
Protein Length | 1159 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637960381 |
Product | UvrD/REP helicase |
Protein accession | YP_567343 |
Protein GI | 91974684 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGCGC CGCGCAGCAT TCCCGATCAG GCGCGCGAGC GTCAGATCCT CGCCTCCGAT CCCTCGGCCT CGGTGTTCGT CTCGGCCAAT GCCGGCTCCG GCAAGACGCA TGTGCTGGTT CAGCGGGTCA TTCGCCTGCT GCTCGATGGC GTGCCGCCGG AACGCATCCT GTGTATCACC TTCACCAAAG CCGCCGCCGC CAACATGGCC GAGCGCGTCT TCACGACACT CGGTCGCTGG GTGACGCTCG ACGACGAGGC GCTGACGGCT GCGATCAAGG CGACTGGTAT CAAGTCGGTT GGGCCTTCTC TTCTGGCGCA AGCGCGAAAA CTGTTTGCCT GCGCGCTGGA GACGCCGGGC GGGCTGAAGG TGCAGACCAT CCACGCGCTC TGCACCCGGT TGCTGCAGCA GTTTCCGTTC GAGGCCAATG TGCCGGCGCG GTTCAGCGTG CTCGACGATC GCGATCAGGC CGAGCTGATG CAGCGCGCCA GCCTCGCGGT GTTGCTGCAG GCGGCGGCCG CGCCGGACAG CGCGGCGGGG CGGGCTCTGA CGTTGGCGAT GACCAGCGCC GCCGACGTCA CCTTCCGCGA GGTGGTGCAG GAAGCCTGCA CCAGGCGCGA TCGCTTCCTC GCCTGGATCA CGCAGGCCGG CGGCGTCGAC GGCGCCATGG CGCAGCTCTC GGCGACGCTC GGCGTCGCGC CGCAGGATCG CTGCGAAGAC GTCGAGCGCG ACATCCTCGA CGGCCCGAAT CTGCCGCGCG CGCAATGGTC TACGGCAGCA GCGATGTTCG AGTCGGGGAG CGCCAACGAC CAGGCGCAGG CGAAGCGTCT GCGCGCGGCG CTCGCGCTGT CGGACGTGGC GCAGCTCGAC AAGTATTGCG AGGTGTTCTT CACCAAGGAC GGCCCGCGCA AAAGTCTGGC CACCAAGAAG ATCGCCGACG CCGCGCCCGG GTTCGTCGAG GATCTGAAGC GCGAAGGCGC GCGGCTCGAA GATCTGCTCG AGCGTCGCCG CGCGCTCCTG ATGCGCGAGC GGACGCGGGC GCTGCTGGTG ATCGCGGCCG ACGTCGCCGA GCGGATCCGG CGCGAGAAGC AGGAGCGTGG GCTTCTCGAT TATGACGATC TGATCGACAA GACGCTCGCG ATGCTCGATA GCGGCGCGTC GAGCTGGGTG CATTTCAAGC TCGATCGTGG CGTCGACCAC GTGCTGATCG ACGAGGCGCA GGACACCAGC CCGAAGCAAT GGGACATCGT CGCGCATCTG ATCGCGGAAT TCACCGCCGG CGAGGGCGCG CGCGATGGCG TGCGGCGCAC GGTGTTCGCG GTCGGCGACG AGAAGCAGTC GATCTTCTCG TTCCAGGGCG CGGTTCCGAA GGAATTCGCC GAGCGGCGCG ATCTGTTGCA GCGGCGCTTC CACGGCGCCG GACTGAACTT CGAGAAGGTG AGTTTCAACT ACTCGTTCCG CTCCGGCGCG ACGATCCTTC AGTCCGTGGA CCACGTGTTC CGCGATCCCG ACATCTATCG CAGTATCCAC GCCGACGCCG CCTACCCGCT GCATCAATCG CTGGCCGATG CCGGCCCGAG CGTGATCGAT CTGTGGCCGC TCGAACTGCC CGACGACAAG CAGAACATCG AGGGCTGGCG TGCGCCGTTC GATGCGGTGT CGGAAACCAG TCCGGAGGTG CGGCTGGCGC AGAAGGTGCA AGCCGAGATC GCGTCGCTGA TTGCGGGCGG CACGATGACG GGCTCGCTCG GCGACCGGCG GCGGCTGCGT TTTGGCGATG TGCTCGTGCT GGTGCGCCGT CGCGGCTCGG CGTTCGACGC GGTGATCCAG GCCCTGAAGC GCGGCGGCAT TCCGGTGGCC GGCGCCGACC GGCTGAAGCT CACCGAGCAT ATCGCGATCA TCGATCTGAT GAATCTCGCC GACGCGTTGC TGCTGCCGCA GGACGATCTT GCGCTCGCGG TGGCGCTGAA GAGCCCGCTG TTCGGCCTCG ACGACGACGA TCTGTTCAGG CTGGCGTGGC GACGCAAAGG CTCGCTGCGC CATGCGCTGC GCGAGAAGGC GGCCGGGGAC GCAAAGTTGG CAACCGCGTT GCAGCGGCTC GATGCCTGCG CGGAGCGGTC GCAGACCGAC ACGCCATTCG GGTTCTACGC CTGGCTGCTC GGCGGCGTCG GCGGCCGCGC AAGGATTTTG CGCAGGCTGG GGCCGGAAGC CAACGACGCG CTCGACGAGT TTCTCGAATT GGCGCTGAGC TACGAGCAGA AGGCTGCGCC GTCGCTGCAG GGCTTCATGG CGTGGCTGCG CGCCGCCGAT ACCGAGATCA AGCGCGACAT GGAAATCTCG CGCGACGAAG TCCGGGTGAT GACCGTGCAT GGCGCCAAGG GTCTCGAGGC GCCGGTGGTG TTCCTGGTCG ATACGACGTC GTCGCCGTCC GACACCCAGC GGCTCAATCT GATCCGGCTG CCCGGCGGCA ATGCGCAGCC GGGCTCCGTC GGCGCGATGG TGTGGGCGGG CCGCAAGTCG AACGATCCGC GCGTCGTCGA GCAGGCCCGC GCGGAGATGG TCAGCGAGAC CGAGGACGAA TATCGCCGGC TGCTCTATGT GGCGATGACC CGCGCCGCCG ATCGGCTGAT CGTCGGCGGC TGTATGCCCG GCAATCGCAA CGAGGTGCGC GCGCTGTCCT GGTACGATCT GATCAGCAAG GGCTTGGAGA ACTCCGGCCT GACGATGCGC ACGGCGCCGC CGGATGGCGC GGTGAAGCGC TATTGCCGTC CCGAGGACGA GGTCACAGAG ATCGCACCGT CCGAACAAGC GCCTGCCGCG CCGCCCCTCG TCATGCCGGA CTGGCTGCAC AAGGCCGCGC CGGCGCTGCG CCGGCCGGAC AATCTGTTGC GGCCATCCGA CCCGGACGAT GCCGATCATC GCCGCATCCG CCGCGGCGAA ACGGAGGCGC AACGCCAGCG CGCCTTGCAG CGCGGCACGC TGGTGCACCG GCTGCTGCAG TCGCTGCCCG ATCTGCCGGC CGACATTCGC GCCAATGCCG CCGACCGCTT CCTCCTCCGC AACGCCGATG ATTGGAGCCC GCAGGAGCGC GACGCGCTCG CCGCGCGGGT GCTGGAGGTG ATCAGCGACG ACCGCTTCGC CGCCGTCTTC GCTCCTGGCA GCCGCGCCGA AGTGCCGATC GTCGGTCGCT TGCAGCGGCA TGGCGAGCCG GTGCTGATCT CCGGCCAGAT CGACCGGCTG GTGGTGACCG ACGCCGAGGT CCTGATCGTC GACTACAAGA CCAATCACGC CCCGCCGCGC AGTCTGGCGG AGACCCCGCC GGCTTACGTC CGCCAGCTCG CACTGTATCG GGCGGTGCTA TCGCTGCTGT ATCCACAGCG GATCGTCCGC GCCGCCCTGC TATGGACCGA AGCGCCTGAA ATCATGGAGA TTTCAGCCCC TGCGCTGGAC GCGGAGCAGG CCGCCTTGAC GGTGGCGTGA
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Protein sequence | MSAPRSIPDQ ARERQILASD PSASVFVSAN AGSGKTHVLV QRVIRLLLDG VPPERILCIT FTKAAAANMA ERVFTTLGRW VTLDDEALTA AIKATGIKSV GPSLLAQARK LFACALETPG GLKVQTIHAL CTRLLQQFPF EANVPARFSV LDDRDQAELM QRASLAVLLQ AAAAPDSAAG RALTLAMTSA ADVTFREVVQ EACTRRDRFL AWITQAGGVD GAMAQLSATL GVAPQDRCED VERDILDGPN LPRAQWSTAA AMFESGSAND QAQAKRLRAA LALSDVAQLD KYCEVFFTKD GPRKSLATKK IADAAPGFVE DLKREGARLE DLLERRRALL MRERTRALLV IAADVAERIR REKQERGLLD YDDLIDKTLA MLDSGASSWV HFKLDRGVDH VLIDEAQDTS PKQWDIVAHL IAEFTAGEGA RDGVRRTVFA VGDEKQSIFS FQGAVPKEFA ERRDLLQRRF HGAGLNFEKV SFNYSFRSGA TILQSVDHVF RDPDIYRSIH ADAAYPLHQS LADAGPSVID LWPLELPDDK QNIEGWRAPF DAVSETSPEV RLAQKVQAEI ASLIAGGTMT GSLGDRRRLR FGDVLVLVRR RGSAFDAVIQ ALKRGGIPVA GADRLKLTEH IAIIDLMNLA DALLLPQDDL ALAVALKSPL FGLDDDDLFR LAWRRKGSLR HALREKAAGD AKLATALQRL DACAERSQTD TPFGFYAWLL GGVGGRARIL RRLGPEANDA LDEFLELALS YEQKAAPSLQ GFMAWLRAAD TEIKRDMEIS RDEVRVMTVH GAKGLEAPVV FLVDTTSSPS DTQRLNLIRL PGGNAQPGSV GAMVWAGRKS NDPRVVEQAR AEMVSETEDE YRRLLYVAMT RAADRLIVGG CMPGNRNEVR ALSWYDLISK GLENSGLTMR TAPPDGAVKR YCRPEDEVTE IAPSEQAPAA PPLVMPDWLH KAAPALRRPD NLLRPSDPDD ADHRRIRRGE TEAQRQRALQ RGTLVHRLLQ SLPDLPADIR ANAADRFLLR NADDWSPQER DALAARVLEV ISDDRFAAVF APGSRAEVPI VGRLQRHGEP VLISGQIDRL VVTDAEVLIV DYKTNHAPPR SLAETPPAYV RQLALYRAVL SLLYPQRIVR AALLWTEAPE IMEISAPALD AEQAALTVA
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