Gene RPC_1804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1804 
Symbol 
ID3972069 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1961315 
End bp1961977 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content71% 
IMG OID637924917 
Productpeptidase U35, phage prohead HK97 
Protein accessionYP_531682 
Protein GI90423312 
COG category[R] General function prediction only 
COG ID[COG3740] Phage head maturation protease 
TIGRFAM ID[TIGR01543] phage prohead protease, HK97 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.409036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.116646 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGCCC CATTGCTTAC GCCATCGCGC CTCGCGCTGT CGGAAGACGG CAGCATCGAA 
GGCTATGCCA GCCTGTTCGG TGCGGTGGAT CAGGCCCGCG ACATGGTGAT GCCCGGCGCC
TTTGCGCAGA CGCTGCGAAG CCGCGGCCTG CGCAAGATCC CGATGCTGTT TCAGCACGAC
CCCGCCGAGC CGGTCGGGAT CTGGCTCGAA CTGATCGAGG ATTTTCGCGG GCTGCGGGCG
CGCGGAAAAC TGATCCCCGA CGTGGCGCGC GGCCGCGAAT TGCTGGCGCT GCTCCGCGAA
GGCGCGATCG ACGGGCTGTC GATCGGCTAT CGCACGGTGC GCGGCGCGAT CGATCCGAAG
ACCCGGATCC GCCGGCTGCA TCAGGTCGAC CTCTGGGAGA TTTCCATCGT CACCTTTCCG
CTGTTGGCGG GCGCCCGGGT CAACGCGGTG AAGGACGTCG CGCGGCCATC GCCGGCGCGC
GACGCCGCCG AGCGGCAATG GCAATTACTG CAGGGGCAGC AACCAGGCGG CGCCGCGGAC
GCACCGGCGC GGCCGGCGCG GCGCGGGCGC GTGGCGGGAC TCTCGCTGCG CGCCCGCGCC
GATCGCAAAC AGGCGCTGCG CGGCGTGGCG CGCGCACCGA TCGCTCTCAG TCGGCTGCGG
TAG
 
Protein sequence
MHAPLLTPSR LALSEDGSIE GYASLFGAVD QARDMVMPGA FAQTLRSRGL RKIPMLFQHD 
PAEPVGIWLE LIEDFRGLRA RGKLIPDVAR GRELLALLRE GAIDGLSIGY RTVRGAIDPK
TRIRRLHQVD LWEISIVTFP LLAGARVNAV KDVARPSPAR DAAERQWQLL QGQQPGGAAD
APARPARRGR VAGLSLRARA DRKQALRGVA RAPIALSRLR