| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0677 |
|---|
| Symbol | dapD |
|---|
| ID | 3908604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 761811 |
|---|
| End bp | 762656 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637882568 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_484299 |
|---|
| Protein GI | 162138523 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTACG CCGCTCTCGA ATCCACCATC AATACCGCTT TCGACGCGCG CGACACGGTC
AGCGCCGCGA CCAAGGGCGA GATTCGGGAT GCCGTCGATC ACGCGCTCGA TCTGCTCGAC
AAGGGCGAGG CGCGCGTTGC CGAGCGCGAG GCGTCGGGCA CGTGGACCGT CAACCAGTGG
CTCAAGAAGG CGGTGCTGCT GTCGTTCCGC CTCAACGACA TGAGCACGAT TCCCGGCGGC
CCCGGCGGCG CGAACTGGTG GGACAAGGTG CCGTCGAAAT TCGAGGGCTG GGGCGAGAAC
CGTTTCCGCG AGGCCGGCTT CCGCGCGGTG CCGGGCGCGA TCGTGCGCCG CTCCGCCTTC
ATCGCCAAGA ACGCGGTGCT GATGCCGTCC TTCGTCAATC TCGGCGCCTA TGTCGATGAA
GCCACCATGG TCGACACCTG GTCGACGGTC GGCTCCTGCG CGCAGATCGG CAAGCGCGTG
CACATCTCCG GCGGCGTCGG CATCGGCGGC GTGCTGGAGC CGCTGCAGGC GGGTCCGGTG
ATCATCGAGG ACGACTGCTT CATCGGCGCG CGCTCCGAAG TCGCCGAGGG CGTGATCGTC
CGCCGTGGCG CGGTGCTGGC GATGGGCGTG TTCCTCGGCG CCTCGACCAA GATCGTCGAC
CGCGAGACCG GCGAGACCTT CATCGGCGAA GTGCCCGAAT ACGCCGTGCT GGTGCCCGGC
ACGCTGCCGG GCAAGCCGCT GAAGAACGGC AATCCGGGCC CGGCCACCGC CTGCGCGGTG
ATCGTCAAGC GCGTCGACGA GCGCACCCGC TCCAAGACCA GCATCAACGA ATTGCTGCGG
GACTGA
|
|---|
| Protein sequence | MSYAALESTI NTAFDARDTV SAATKGEIRD AVDHALDLLD KGEARVAERE ASGTWTVNQW
LKKAVLLSFR LNDMSTIPGG PGGANWWDKV PSKFEGWGEN RFREAGFRAV PGAIVRRSAF
IAKNAVLMPS FVNLGAYVDE ATMVDTWSTV GSCAQIGKRV HISGGVGIGG VLEPLQAGPV
IIEDDCFIGA RSEVAEGVIV RRGAVLAMGV FLGASTKIVD RETGETFIGE VPEYAVLVPG
TLPGKPLKNG NPGPATACAV IVKRVDERTR SKTSINELLR D
|
|---|
| |