| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0013 |
|---|
| Symbol | |
|---|
| ID | 3910218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 13407 |
|---|
| End bp | 14954 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637881894 |
|---|
| Product | 4Fe-4S ferredoxin, iron-sulfur binding |
|---|
| Protein accession | YP_483636 |
|---|
| Protein GI | 86747140 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0348] Polyferredoxin |
|---|
| TIGRFAM ID | [TIGR02745] cytochrome c oxidase accessory protein FixG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTGGGGG GCACGCGAGG GTCGACAGAC GCGCCGGCCG CGGAGTCGCG GCGCGGCGAC
GAAACCAAGA AGAACCCCGA GATGAACAAG CCCCTGCGCG ACACCGACCT GGTCCCGGAC
GACGACGGAG GCCCGCTCTA CGCCGCCGGG AAGAAGATCT ATCCGCAGCG CGTCTCGGGA
TCGTTCCGGC GCATCAAATG GATCCTGATG GCGGTGTGCC TCGGGATCTA CTACTTCCTG
CCCTTCGTGC GCTGGAATCG CGGCCTCGGC GCACCCGACC AGGCGGTGCT GATCGATCTC
GCCAACAACC GTTTCTATTT CTTCTTCATC GAGTTGTGGC CGCAGGAGAT CTATTACTTC
ACCGGCCTTT TGATCGTCGC CGCGATCACG CTGTTTCTGA TGAACGCGCT CGGCGGCCGG
GTGTGGTGCG GCTATCTCTG CCCGCAGACG GTGTGGACCG ACCTGTTCTT CGCGGTCGAG
CGGCTGGTCG AGGGCGATCG CCGCGAGCGG ATGCGCAAGG CCGAGGAGGG TTGGTCGCTG
CAGCGCGGCT CCGAGTTGGT GCTGAAGCAT TCGATCTGGC TGATGATCGC GTGGTGGACC
GGCGGCGCCT GGGTGCTGTA TTTCGCCGAC GCGCCGACGC TGATCAAGGA CCTGGTCACC
TTCCAGGCGC CGATGGTCGC CTATATCTGG ATCGGCATCC TCACCTTCAC CACCTACACG
CTCGCCGGCT TCATGCGCGA GCAGGTCTGT GTCTACATGT GCCCGTGGCC GCGGATCCAG
GCGGCGCTGA CCGACGAATG GGCGCTCAAC GTCACCTATA AGTACGATCG CGGCGAGCAG
CGCACCTCGC TGAAGAAGGC CGCGCAGGCG CGCGCGCTGG GCGAACAGGT CGGCGACTGC
GTCGATTGCA ACCAGTGCGT CGCGGTGTGC CCGACCGGCA TCGACATTCG CAACGGGCCT
CAGCTCGACT GCATCCAGTG CGGCCTGTGC ATCGACGCCT GCGACAACGT CATGACCAAG
ATCGGCCGCC CGACGCGGTT GATCGGCTAC GACAACGACA TCAACATCCA TCGCCGGATG
GAGGGCAAGC CGGAGATCTT CAAGCCGCTG CGTGCCCGCA CCGTGGTGTA TTCGGCGCTG
ATCGCCGGCA TCGGCGCGAT CATGCTGTAT GCGCTGCTGA ACCGCAGCCT GCTCGACCTC
AACGTGCTGC ACGACCGCAA CCCGGTCGCG GTGCGGCTCA GCGACGGCTC GATCCGCAAC
GGCTACACCA TCCGCTTCCT CAACAAGCGC GGCTTCGACC GCGTGATCGC GGTCGACGTC
AGCGGGCCGC CGAATGCGGT GATCCACATC GTCGGCGCGG ATTCGATCGT GCCGGACCGG
CCGATGATCA TCCTGGCCCG CGACGCCACC ACCGAACTGC GCGTGCTGGT CGATTCCCGC
CCGTCGTCCG AGGAAGACCT CGCACCGTCC ACGCCGGTGG CGTTCCACGT CACCGATATC
GGCCTCGGCG AAGTCGCATC CGCCAAGGAC GTCTTCGTCA AGCCCTGA
|
|---|
| Protein sequence | MLGGTRGSTD APAAESRRGD ETKKNPEMNK PLRDTDLVPD DDGGPLYAAG KKIYPQRVSG
SFRRIKWILM AVCLGIYYFL PFVRWNRGLG APDQAVLIDL ANNRFYFFFI ELWPQEIYYF
TGLLIVAAIT LFLMNALGGR VWCGYLCPQT VWTDLFFAVE RLVEGDRRER MRKAEEGWSL
QRGSELVLKH SIWLMIAWWT GGAWVLYFAD APTLIKDLVT FQAPMVAYIW IGILTFTTYT
LAGFMREQVC VYMCPWPRIQ AALTDEWALN VTYKYDRGEQ RTSLKKAAQA RALGEQVGDC
VDCNQCVAVC PTGIDIRNGP QLDCIQCGLC IDACDNVMTK IGRPTRLIGY DNDINIHRRM
EGKPEIFKPL RARTVVYSAL IAGIGAIMLY ALLNRSLLDL NVLHDRNPVA VRLSDGSIRN
GYTIRFLNKR GFDRVIAVDV SGPPNAVIHI VGADSIVPDR PMIILARDAT TELRVLVDSR
PSSEEDLAPS TPVAFHVTDI GLGEVASAKD VFVKP
|
|---|
| |