| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3555 |
|---|
| Symbol | |
|---|
| ID | 3369086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4233778 |
|---|
| End bp | 4235010 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637653910 |
|---|
| Product | aspartate kinase |
|---|
| Protein accession | YP_236625 |
|---|
| Protein GI | 66046784 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0527] Aspartokinases |
|---|
| TIGRFAM ID | [TIGR00656] aspartate kinase, monofunctional class
[TIGR00657] aspartate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00961214 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.594079 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAA TCGTACAGAA ATTTGGCGGC ACCTCCGTGG GCTCTGTAGA GCGCATCGAG
CAGGTGGCCG ACAAGGTCAA GAAATTCCGT GAGGCGGGTG ACGACCTGGT GGTCGTGCTG
TCGGCCATGA GCGGTGAAAC CAATCGTCTG ATCGAGCTGG CCAGGCAGAT CAGTGATCAG
CCGGTTCCCC GTGAGCTGGA TGTCATTGTC TCCACGGGCG AGCAGGTGAC CATCGCGCTG
CTGGCGATGG CCTTGATGAA GCGTGGCGTT CCGGCGGTGT CCTACACCGG CAATCAGGTG
CGTATTCTCA CCGACAGCGC GCACAACAAG GCGCGCATTC TGCAGATCGA CGACCAGAAG
ATCCGCTCCG ACCTGAAAGC GGGTCGTGTG GTGGTGGTCG CCGGTTTCCA GGGTGTCGAC
GAACACGGCA ATATCACCAC CCTCGGCCGT GGTGGCTCGG ACACGACCGG TGTTGCCCTG
GCGGCGGCGC TGAAAGCGGA CGAGTGCCAG ATCTACACCG ACGTCGATGG CGTCTACACC
ACCGATCCGC GTGTCGTGTC GCAGGCCCAG CGCCTCGACA AGATCACCTT CGAAGAGATG
CTGGAAATGG CCAGCCTCGG TTCCAAGGTG CTGCAGATCC GTGCGGTCGA ATTCGCCGGC
AAATACAATG TCCCGCTGCG CGTTCTGCAC AGCTTCAAAG AGGGGCCGGG CACCCTTATT
ACAATCGATG AAGAGGAATC CATGGAACAG CCGATCATTT CCGGCATCGC CTTCAACCGC
GATGAAGCCA AGCTGACCAT CCGTGGTGTG CCAGACACCC CCGGCGTGGC GTTCAAGATT
CTCGGCCCGA TCAGCGCGGC CAATATCGAA GTGGACATGA TCGTGCAGAA CGTCTCGCAC
GATAACACCA CCGATTTCAC CTTCACGATC CATCGCAACG ATTATCAGGC GGCCTTGCAG
GTGCTCGAAG CCACCGCGCG TGAAATCAGC GCGCGTGAAG TGTCCGGCGA TACCAAGATC
GCCAAGGTGT CCATCGTCGG CGTCGGCATG CGCTCGCATG CCGGCGTTGC GAGTCGCATG
TTCGAAGCGC TGGCCAAGGA GAGCATCAAT ATCCAGATGA TCTCCACATC GGAAATCAAG
GTTTCCGTGG TCATCGAAGA GAAATACCTG GAGTTGGCTG TGCGCGCATT GCACACGGCC
TTTGAGCTGG ATGCTCCGCG GCAGGGTGAA TGA
|
|---|
| Protein sequence | MALIVQKFGG TSVGSVERIE QVADKVKKFR EAGDDLVVVL SAMSGETNRL IELARQISDQ
PVPRELDVIV STGEQVTIAL LAMALMKRGV PAVSYTGNQV RILTDSAHNK ARILQIDDQK
IRSDLKAGRV VVVAGFQGVD EHGNITTLGR GGSDTTGVAL AAALKADECQ IYTDVDGVYT
TDPRVVSQAQ RLDKITFEEM LEMASLGSKV LQIRAVEFAG KYNVPLRVLH SFKEGPGTLI
TIDEEESMEQ PIISGIAFNR DEAKLTIRGV PDTPGVAFKI LGPISAANIE VDMIVQNVSH
DNTTDFTFTI HRNDYQAALQ VLEATAREIS AREVSGDTKI AKVSIVGVGM RSHAGVASRM
FEALAKESIN IQMISTSEIK VSVVIEEKYL ELAVRALHTA FELDAPRQGE
|
|---|
| |