| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2617 |
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| Symbol | |
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| ID | 3368134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3172404 |
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| End bp | 3173561 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637652965 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235694 |
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| Protein GI | 66045853 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000106145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT TGAAGTTTCG CAAAGTGCTC ATCGTTGTCG TGTTGTTGGT TCTGGCAGCG
GGTATTGCCT ACAGCGTCCA GTCCCCGGAA AAGGCTCCGG AGTACCTGAC TGCCAAGGTC
GAACGCACCG ATATCGAAAA CTCGGTGCTG GCCAGCGGGG TGCTGCAGGG CATCAAGCAG
GTTGACGTCG GCGCGCAGGT CTCGGGCCAG CTCAAGTCTT TGAAGGTCAA TCTGGGCGAC
AAGGTCAAAC AGGGTCAGTG GCTGGCGGAA ATCGATCCCG TGGTGCTGCA GAACACGCTG
CGCCAGTCGC AGGTCAACGA ACAGAACCTG ATCGCCCAGA AGGATGCGGC TGTCGCACAG
CTCAAGGACG CCAAAGCCAT TTACCAGCGC TACAAGCAAC TGCGTGCGGA TGATGCGATC
TCGCAAAAGG ACTTCGATAC GGCGCAATCG GACTTCGAGG TCCGGAGTGC CAACCTGCGG
TCGCTGGAAG CCCAGGTGCG CGACGCAAGA ATCCAGATCG AGACCGCCAG GATCAACCTG
GGCTACACCC GTATCGTCGC GCCGATCAGT GGTGATGTGG TGGGTATCGT GACGCAGGAA
GGTCAGACTG TGATCGCCAG CCAACTGACA CCGGTGATTC TCAAATTGGC GGATCTGGAC
ACCATGACCG TCAAGGCTCA GGTCTCCGAG GCCGACGTGA TTCATATCAC CCCCGGGCAA
GAGGTGTATT TCACCATCCT CGGCGATGCC GAAAAACGCT ATTACGCCAA GCTGAAAGGC
ACGGAGCCAG CGCCGCAAAA CTTCCTTGAT GCGCAATCCA GCACCGCCAG CAAACCGAAC
AGTGCGGTGT TCTACAACGC ATTGTTCGAC GTCCCCAACC CTGATCACCG CCTGCGTATT
TCGATGACCG CCCAAGTGCA TATCGTGCGT GAAAAGGCCA AGGACGTGTT GACTGTCCCT
GTTGCGGCCC TGGGCGACAA GAATGGCGAC GGCAGCTTCC CGGTGCGTGT GGTGGACGCG
CAGGGCCAGG CCCAGAGCCG CAATGTGCAG ACCGGCATCA ACAACAACGT GCGGGTCGAG
ATCAAGAGTG GCCTTGCCGA GGGTGACCAG GTGGTGATCG GTGAACCGTC GGCTACACCA
GCAGCAGCGG GGGCCTGA
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| Protein sequence | MKKLKFRKVL IVVVLLVLAA GIAYSVQSPE KAPEYLTAKV ERTDIENSVL ASGVLQGIKQ
VDVGAQVSGQ LKSLKVNLGD KVKQGQWLAE IDPVVLQNTL RQSQVNEQNL IAQKDAAVAQ
LKDAKAIYQR YKQLRADDAI SQKDFDTAQS DFEVRSANLR SLEAQVRDAR IQIETARINL
GYTRIVAPIS GDVVGIVTQE GQTVIASQLT PVILKLADLD TMTVKAQVSE ADVIHITPGQ
EVYFTILGDA EKRYYAKLKG TEPAPQNFLD AQSSTASKPN SAVFYNALFD VPNPDHRLRI
SMTAQVHIVR EKAKDVLTVP VAALGDKNGD GSFPVRVVDA QGQAQSRNVQ TGINNNVRVE
IKSGLAEGDQ VVIGEPSATP AAAGA
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