| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2373 |
|---|
| Symbol | araH |
|---|
| ID | 3367888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2751900 |
|---|
| End bp | 2752889 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637652719 |
|---|
| Product | L-arabinose transporter permease protein |
|---|
| Protein accession | YP_235450 |
|---|
| Protein GI | 66045609 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00546665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.130195 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATA AAAAAGAGGT GCGTATGTCT ACCGAATCCA GCCTGCAGGC TCCCCGTCAG
GGCATGAACC TGCGTCGTTT CGCCGATGAC TGGGTGATGC TCCTGGCCGC CGTGGGGATT
TTCCTGCTGT GTGCCGTGTT CATCGATAAC TTCATGTCGC CGCTGAACAT GCGCGGTCTG
GGCCTGGCGA TTTCCACTGT AGGTATCGCT GCCTGCACCA TGCTCTTTTG CCTGGCGTCC
GGGCACTTCG ACCTCTCGGT CGGTTCGGTG CTGGCTTGTT CCGGGGTGAT CGCCAGTATC
GTCATCCGCG ACACCGACAG CGTATTTCTG GGTGTCTCGG CAGCCCTGGC GCTCGGGTTG
GTCGTGGGTC TGATCAACGG CATTGTGATC GCCAAGCTGC GCATCAATGC CCTGATCACG
ACTCTGGCAA CCATGCAGAT CGTGCGCGGC CTGGCGTACA TTTTCTCCAA CGGCAAGGCC
GTCGGCGTTT CCAACGAGGA CTTCTTCATC TTTGGCAATG GCCAGGTGTA TGGCGTGCCG
GTGCCGATCC TGATCACCAT TGCCTGCTTC ATATTCTTCG GCTGGCTGCT CAACTACACC
ACCTATGGGC GCAACACCAT GGCCATCGGC GGCAACCAGG AAGCCGCGCT GCTGGCGGGT
GTCCACGTGG ACCGCACCAA GATCATCATT TTCGCCGTCC ACGGCCTGGT CGGTGCATTG
GCTGGCGTAG TCCTGGCTTC GCGCATGACT TCGGGGCAAC CGATGATCGG GCAGGGCTTC
GAGCTGACGA TCATCTCTGC CTGCGTATTG GGCGGGGTTT CGCTGAGTGG CGGCATCGGC
ATGATCCGGC ATGTGATCGC CGGGGTGCTG ATTCTTGCAA TCATCGAGAA TGCGATGAAC
CTGAAGAACA TCGATACGTT CTACCAGTAT GTGATTCGCG GCACGATCCT GTTGCTGGCG
GTGATCATCG ACCGCATGAA GCGCCGCTGA
|
|---|
| Protein sequence | MNNKKEVRMS TESSLQAPRQ GMNLRRFADD WVMLLAAVGI FLLCAVFIDN FMSPLNMRGL
GLAISTVGIA ACTMLFCLAS GHFDLSVGSV LACSGVIASI VIRDTDSVFL GVSAALALGL
VVGLINGIVI AKLRINALIT TLATMQIVRG LAYIFSNGKA VGVSNEDFFI FGNGQVYGVP
VPILITIACF IFFGWLLNYT TYGRNTMAIG GNQEAALLAG VHVDRTKIII FAVHGLVGAL
AGVVLASRMT SGQPMIGQGF ELTIISACVL GGVSLSGGIG MIRHVIAGVL ILAIIENAMN
LKNIDTFYQY VIRGTILLLA VIIDRMKRR
|
|---|
| |