| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2288 |
|---|
| Symbol | |
|---|
| ID | 3367803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2658248 |
|---|
| End bp | 2659015 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637652638 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_235369 |
|---|
| Protein GI | 66045528 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.018697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000321635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTGTT CAGACTTTGT TCATAGAGAG AGCTGCGCCA TGAACCTGAT TGCTTCGCCT
TTTGAATCCA TCGAACACGC GGTCATCTGG CTGCTGGTCA TTTTTTCCGT CGCGACCTGG
GGCCTGGCCC TGCTCAAGGG CGTGCAGTTT TCGCGCCTGA AGTCTCAGGA TCGCAAGTTC
CACAAGCAGT TCTGGGCGGC ATCGAGCTTG GATTCAGCCG CGCAACTGGC CCACGAGCAA
CCGGGCGCTG CCGCTCGGGT CGCGCTGGCC GGTTACGCCG CCATTCAGGT GGCGGATGGC
GCGCAGGCCC ATGACCTCAG TCAGTCCATC AACCATCAGG ACCGCCTTGA GCGCGCCCTG
CGTCAGCAGA TCGTCCGCGA GCGCCGCTCG CTGGAAACCG GTCTGGCCAT CCTCGCCAGC
ATCGGCAGCA CTTCGCCTTT CATCGGTCTG TTCGGTACGG TCTGGGGCAT CATGTCGGCC
CTCAAGGGCA TCAGTGCGGC CGGTTCCGCG AGCCTGGAAA CGGTGGCCGG GCCGATCGGC
GCGGCGCTGG TGGCAACCGG TGTCGGCATT GCCGTCGCAG TGCCTGCAGT GCTGGTCTAC
AACTACTTTC TGCGACGCCT GAAACTGACG GCTGCCGATC TGGATGACTT TGCCCATGAC
TTCTATAGCC TGGCGCAGAA GAGTGCCTTC CGTGTGCTGC TGCATCCGGT ATTGAAGTCC
GGCGCTGCAG GCGCACACGC CGGGCAGAAA GTGCAGGAGG CCTCCTGA
|
|---|
| Protein sequence | MPCSDFVHRE SCAMNLIASP FESIEHAVIW LLVIFSVATW GLALLKGVQF SRLKSQDRKF
HKQFWAASSL DSAAQLAHEQ PGAAARVALA GYAAIQVADG AQAHDLSQSI NHQDRLERAL
RQQIVRERRS LETGLAILAS IGSTSPFIGL FGTVWGIMSA LKGISAAGSA SLETVAGPIG
AALVATGVGI AVAVPAVLVY NYFLRRLKLT AADLDDFAHD FYSLAQKSAF RVLLHPVLKS
GAAGAHAGQK VQEAS
|
|---|
| |