Gene PsycPRwf_0877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_0877 
Symbol 
ID5205750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1041769 
End bp1043397 
Gene Length1629 bp 
Protein Length542 aa 
Translation table11 
GC content45% 
IMG OID640599098 
Productcholine/carnitine/betaine transporter 
Protein accessionYP_001279779 
Protein GI148652686 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.359976 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000108541 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGAGT TGAAAATTGG TCGATTGGGT CCTTTTCCCA AGGTCAATAA GCCGGTATTT 
ATAGCCTCAG TTGTATTGAT TGTCGGGTTT ATCATTTTTG GGGCTCTATT TCCAAAAGTG
GCCAATACCG TATTTACACA AGCCCAAAGC TTTATTACCC ACAGATTTGG TTGGTTTTTT
ATTGTGGTCA TGAATGCCGC AGTGGTGATG TGTCTGTATT TAATTTTTAG TAAATATGGC
GACATTCGTC TGGGACATCA GACTGAAGCA CCGCAGTATA GTTTGCCATC TTGGATTGGC
ATGTTGTTCT CGGCAGGCAT TGGTATTGGT ATTATGTACT GGGGTACTGC TGAGCCAGTG
TACCATTTTA TGGCACCACC TTTGGGCGAG AAAGAGACCG TGGAAGCCGC TAAACAGGCG
ATGAACATCT CATTTTTGCA TTATGGTATT CATGCTTGGG CTATTTATGC GTTTGTGGCG
CTGTCTTTGG CCTATTTTCA TTTTCGCCGT GGTTTACCAC TGGCCATTCG TTCAGCGCTA
TACCCTATAT TAGGTAAGCG CATTTATGGC GGCTGGGGCC ATACGGTAGA TACCTTAGCG
GTATTTGGTA CCATGTTCGG TGTGGTGACA ACTTTGGGTC TTGGCGTGTT ACAGATTAAC
TCAGGTCTAG AGGGCCTATT TAGTCTGCCC AATAACATCA CCATACAGAT TGTGTTGATC
GGCTTTATTA CCTTACTGGC CTGTGGCTCA TTAATGCTAG GCTTGGACAA AGGTATCAAG
CGGTTAAGCG ATCTTAATAT CTTTTTGACC TTTGTGCTGT TGGCTTTTGC TTTTATATTG
GGCCCCAGTC AGTACATTAT GGACAGTTTC GTCGAAAATA TTGGTAATTA TGCCCAAAAC
CTAATTCAGT TGGCCTTTTG GAATGAAGCT TACTCTAAGA CAGATTGGCA GTCTGCTTGG
ACCATTTTCT ATTGGGCTTG GTGGGTAAGT TGGTCACCTT TTGTTGGTGT CTTTATTGCT
CGTATTAGCC GTGGCCGCAC CATTCGTGAG TTTTTATTGG GCGTGCTATT TGTGCCAATG
GCTATTTTAT TCTTCTGGTT CACTACCTTT GGTGGGGTGG CGGTGAATAT GGAGCTACTA
GGCAACCCAG GCTTTATCGA AGTGGTGCAA AATGATTATG GTAATGCCAT CTTTAAACTG
ATGGAGTTCT ACCCCTTTAC TCAGGCCACC ACCTTGCTGA TTGTGGTGAT GATTGTGCTG
TGGTTTGTGA CCTCATCAGA CTCTGCAAGC TTCGTGATTG ATATGTTAAC CTCAGGTGGT
GATGCCAATC CTCCTAAGAT TCAACGTCTA TTTTGGGCAG TGGCTCAAGG ATTGGTAGCT
GCTATTTTGC TGGCAGCGGG TGGATTGGGT GCGTTACAAG CGGCAGCTAT TGTGGCAGGC
TTTCCATTTG CCGTGGTGAT AGTGGTGATG ATGTACTCCT TAATGCGAGG TTTAAGCCGT
GACCGCTTAA TCTTATACCG CGCTCATCAG TGGTTTATTA CCGAGGAGTC GGCTGAGCAC
AATACTGCTG ATGAATTCGT TGATGAAGAG CTGTTGAAAG GTCCCCCTAA GATTATCTCA
GGCGATTAA
 
Protein sequence
MSELKIGRLG PFPKVNKPVF IASVVLIVGF IIFGALFPKV ANTVFTQAQS FITHRFGWFF 
IVVMNAAVVM CLYLIFSKYG DIRLGHQTEA PQYSLPSWIG MLFSAGIGIG IMYWGTAEPV
YHFMAPPLGE KETVEAAKQA MNISFLHYGI HAWAIYAFVA LSLAYFHFRR GLPLAIRSAL
YPILGKRIYG GWGHTVDTLA VFGTMFGVVT TLGLGVLQIN SGLEGLFSLP NNITIQIVLI
GFITLLACGS LMLGLDKGIK RLSDLNIFLT FVLLAFAFIL GPSQYIMDSF VENIGNYAQN
LIQLAFWNEA YSKTDWQSAW TIFYWAWWVS WSPFVGVFIA RISRGRTIRE FLLGVLFVPM
AILFFWFTTF GGVAVNMELL GNPGFIEVVQ NDYGNAIFKL MEFYPFTQAT TLLIVVMIVL
WFVTSSDSAS FVIDMLTSGG DANPPKIQRL FWAVAQGLVA AILLAAGGLG ALQAAAIVAG
FPFAVVIVVM MYSLMRGLSR DRLILYRAHQ WFITEESAEH NTADEFVDEE LLKGPPKIIS
GD