| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4862 |
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| Symbol | |
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| ID | 5194129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5452524 |
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| End bp | 5457464 |
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| Gene Length | 4941 bp |
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| Protein Length | 1646 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640589347 |
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| Product | CheA signal transduction histidine kinase |
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| Protein accession | YP_001270166 |
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| Protein GI | 148550064 |
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| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00418474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCTTCTG CAGTAAGCCC CGAGCGTCAC GAAACAGTGG CGCTGGCCTG GACCAAGGCC
GCCATCCTCG ATTGCCTGGG CCAGGCACGG CAGGCGCTGG AGCGCTTTGC CGGCGAGACG
GGCGACCTGT CGATGATGGC TTTCGTGGTC GACAACCTGC ACCAGGTGCA CGGCTGCCTG
CGCATGCTCG AACTGCGCGG CGCCACGCGC CTGGCCGAGG AGTTGGAGCT GTTCGCCAAG
GCATTGGCCG ACGGCCAGGT CAGCCCCCGG GGTGATTGCC TGGGCGCATT GTTCCGCGGC
CTGGAGCAGT TGCCCTCGTA CCTGGAGCGG TTGCGCGGTG CCCGCCACGA CCTGCCACTG
GTCATGCTGC CGTTGCTCAA CCAGCTGCGT GCCTGCCGTG GGGAGGAACC GCTGGCCCAG
GCCAGCCTGA TGACCGGTGC CGCCCAACGC TTTGCGGGTG ACGATGACCT TGCCAACCTC
GACCTGTCGC TGGGCAACTG GCGTGACCAG CTGCAGGCCG GGTCAGGGCG CGATGCGCTG
CGTTCGGTGG TGACTGCACT GTGCGACGAC TTGATGCGCA TCAAGGAGCG CCTGGACCAG
TACGGCCGCG GCGACCGTCA GCACAGCGAG CAGCTCGATG CGCTGCTGGC ACCGTTGCGC
CACGTGGCTG ATACCCTGGC GGTACTGGGC TTTCAGCAAC CGCGGCGGGT GATCATCGAC
CAGGTGTTGG CGTTGCAGGC ATTGGCTCAG GGCGAGCGGG CGGTGGACGA CGCGGTGTTG
ATGGACGTGG CGGGGGCCCT GCTGTACGTG GAGGCCTCCC TGAACGGCAT GGTCGGCCCT
TTGGAGGAAA GCGGCCAAGG CAGCCTGCCA GGCTCGGACC TGGCGGAGAT ACGCCAGCTG
GTGCTGCATG AAGCGCTGAA CGTGTTGCAG CAGGCCAAGG ATCTGATCGG CGATTACCTG
GAGTCCGACT GGCCCCGGCA ACGCCTGCAA CCCTTGCCGG GGCTGTTGCA GCAGATCCGC
GGGGCACTGG CCATGTTGAT GCTGCCGGCC GTGGCCGAGC TGTTTGTCGG CTGCGCAAGC
TATGTGCAGC GTTGGTTGCA GCACCTGGAG GAAGAGCCGC CGGTTGATGA GCTGACGCAC
TTGGCTGAGG CGCTGAGCGC TGCCGAATGC TACCTGCAAT GGCGGGCAGC CGACCCGCTG
GCCGATGGCC AACCCTTTAT CGAGATGGCG CGGGCCAGCT TGGCGGCGCT GGGTGTGCAG
TGCGCGGTGG TTGGGGCCAG CGCAGACCTG GACGGCAGTG GCGACGGCAT CGATGACGAG
CTTCGCGAGG TGTTCCTTGA TGAAGCGGGC GAGCTGCTGC CGGAAATCGA GCGCCACTGG
CTGCGCTGGC GTGCCGACAA CCAGCAGCGC GAGGCGCTGG GCGAAGTGCG TCGCGCGCTG
CATACACTCA AAGGCAGTGG CCGCATGGTG CATGCCGAGG CGGTGGCTGA ACTGGCCTGG
GGCGCCGAGC ACCTGCTGAA CCGGGTGCTC GAGGGCCGCA GCGTGCTCAC CCCGGAAGGG
GTTGTAGCGC TGCAGCAGGT GTTCGTTCAC CTGCCTGACT TGCTGGCCGA CTTTGCCGCC
GGCCAGTTGC CGCAACTGAC TGAAATCGAG CAATTGGCCG GGCACCTGCA CAGCCTGGCC
GAAAACGATG CCCCGGCGGC TGCCGGTGTC GATGGCCTCG ATCCGCAGTT GCTGGGCATT
TTTCGTACCG AGGCGCAGGG CCATCTGGCC AGCCTTGAGG TTTATCTGCA AAGCGCCGGC
GGCCAAGACA CGCCGGTCAG TGATGACTTG CAGCGTGCCT TGCACACGCT CAAAGGCAGT
GCCGCCATGG CCGGGGTGAT GCCGGTCGCC GAACTGGCCA CCGCCTTCGA CCGCCTGGCC
CGTGAATACA AGGGTCATCA ACTGCCACTG CAAATGGCCG AGATGGAGTG GCTGGAAGCT
GCGCGGTCGT TGTTCCATCT GGGCTTGGCG CAACTCGATA GCACACCGCT GGCCGCCATT
CCCGGCGCCG CGGAACTGAT CGAGCAGGTG GGCCAGGCCG TGGACGGCCG CCTGGCCAGT
CTGCATGAAG ACTCGCACCA TGCCGGCCGC AGCAAGCGTG ATCCGCAGTT GGTCGCCAGC
TTCCTGGCGC AGGCCATGGA CATTCTGCTC GATGCAGAGA CGTTGTTGTC GCGCTGGCAG
CAACAGCCCG CCCAGCGCGA CGCACTGGAT AACCTGCTCG ACCAGATGAC CACCCTGGGG
CACGCTGCGC ACCTGGCCGA CCTGTGGCAG ATGGATGAGG TGTGCGAGGC GTTGCTGGAC
CTGTATGGCG CGGTGGAGGA GGGCAGCCTG CCTGCCGATT CCCGCTTCTT CAGCCAGGCC
CAGCGGGCCC ATGAGGCCTT GCTGGACATG CTGGACGAAG TGGCGGCCGG GCAGGATATT
CCACCGCGCC CGGAGCTGGT CGATAGCCTG CGCAACCTGC TGGACCAGGC CCTGGCGCCG
GATGCCACCG GCCTGGTGGG CATCGATACG GTCACACCGC TGCACCCGGA CATGGACCTG
GCCGATACCT TGGGGCTGCC GCACCCGCCG TTGCAGCCGC AGGTGGCAGA GCCGCTTGCC
GAGGCGCCGG AAAGCCCCGG CGAAGAGCTG CTGGAAGTGT TCCTGGAAGA AAGCTCGGAC
ATCGTCGAGA GCGCCGCGGC GGCTCTGGCG CGCTGGCAGG CCGACCCGCG CAGCAGCGTC
GAGGTGGACA ACCTGATGCG CGACCTGCAC ACCCTCAAAG GCGTGGCGCG CATGGTCGAA
ATCACCCCGA TCGGCGACCT GGCCCACGAA CTGGAGTTCC TCTACGAGTT GTTGGCTGCG
GGTAGATTGC CGCCAAGCGC GCCACTGTTC GCACTGCTGC AGAACTGCCA CGACCGGCTG
GCGCATATGC TTGACGCTGT GCGCCTGGGG CAGCCGCTGC ATGCCGCCAC GGCGCTGATC
GACTACATTC GCAACTTCAG CAGCGCCGCA CTGACAGACA CTGCCGCAGG CCAGGGGCCG
CCAGAAGCTG CAACCGCCGA AGTTCCGGCA GCAGCACCAG AGCGGGCACC GGGTGACATG
GTCAAGGTCG ACGCCGAGCT GCTCGACGAC CTGGGTAACC TGGCCGGCGA GCACTCGATC
ATCCGTGGGC GCATCGAGCA GCAGGTCAAC GACGCGCAGT TCGCCCTCAA CGAGATGGAG
ACCACACTCG AGCGCATGCG TGATCAGTTG CTGCGTCTGG ATGTCGAGAC CCAGGGGCGA
ATCTCCAGCC GGCAGCAGTT CGAAGGCGAT GCCTATGACG ACTTCGACCC GCTGGAAATG
GACCGCCACT CCCAGCTGCA GCAGCTGTCA CGGGCCCTCT TCGAGTCTGC CTCGGACCTG
CTCGACCTGA AGGAGACCCT GGCTCAGCGC GCTCAGGAGG CCTACAGCCT GCTGCAGCAG
CAGGCGCGGG TGAACAGCCA GTTGCAGGAG GGCCTGACTG CCACCCTGAT GGTGCCGTTC
GAGCGCCTGG TGCCGCGCTT GCAGCGCGTG GTGCGGCAGG TGGCCAGCGA GCTGGGCAAG
CAGGTGGAAC TGGTGGTTGG CAATGCCGAG GGCGAACTGG ACCGCAGTGT GCTGGAACGT
ATGGTGGCGC CGCTGGAGCA TATGCTGCGC AACGCCGTTG ACCACGGCCT GGAAAGCCGC
GCAATGCGCC TGGCCGCCGG CAAGCCGGAG CAGGGCACCA TTCACCTGAA TTTGCTGCAT
GAGGGCGCCG ATATCGTCAT CGAAATGACG GATGATGGTG CTGGCGTGCC TCTGGAAGCA
GTGCGGCGCA AGGCCATCAA GCGCGGCCTA TTGGACCCGC AGGCGCAGTT GAGTGACCAC
GAAATCCTGC AGTTCATCCT GCGGCCAGGC TTTTCCACCG CCGAAAAGAT TACCCAGATT
TCCGGGCGCG GGCTGGGCAT GGATGTGGTG CACGAGGAGG TCAAGCAACT GGGTGGCTCG
ATGAGTATCG AGTCGGCGCA GGGCAAGGGG GCGCGTTTCC TGATCCGCCT GCCGTTCACC
GTGTCGATCA ACCGTGCGCT GATGGTGCAC CTGGGCGATG AGCAGTACGC CATTCCGCTC
AATACCATCG AGGGCATTGT CCGCGTGCCA CCTGCCGAGC TTGCGGCGTG CTACCAGCTG
GACTCGCCGC GCTATGTCTA TGCCGGCCAC GAATACGAGC TGCGCTACCT GGGCGAGTTG
CTGCAAGGCC TGCCGCGCCC GGCGCTGCTT GGGCAAAGTG TGCCGTTGCC GGTGCTGCTG
GTGCATTCCA AGGAGCAGTC GTTTGCCATC CAGGCCGACA GCCTGTCGCC CAGCCGCGAG
ATCGTGGTGA AAAGCCTGGG GCCGCAGTTT GCCGCGGTTG CCGGGTTATC GGGGGCGACA
CTGCTGGGCG ATGGCCGGGT GGTGCTGATT CTTGACCTGC TGGGCCAGCT GCGCGGCCAG
CAGCGACGGC TGGCCCGCTT GCCCGGTGGC GGTAGCCAAC GCCAGTTGCT TGGCCCGGCA
CCGCGCCGTG CCTTGCTGGT GATGGTGGTG GACGATTCGG TAACCGTACG CAAGGTTACC
AGCCGCCTGC TGGAGCGCCA CGGCATGAGC GTGCTCACGG CCAAGGATGG CGTCGATGCC
ATGGCCTTGC TGGAAGAGCA CCGGCCCGAC GTGTTGTTGC TGGACATCGA AATGCCGCGC
ATGGACGGCT TCGAGGTGGC CACACGCATC CGCCGTGACG CGCGGCTGAA GGACTTGCCG
ATCATCATGA TCACCTCGCG TACCGGCCAG AAGCACCGGG ACCGCGCCAT GGCCATCGGC
GTCAACGAAT ACCTGGGCAA GCCGTACCAG GAGTCGCTGC TGTTGCAGAG CATCGCCCAT
TGGAGCCAGG CCCATGCTTG A
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| Protein sequence | MASAVSPERH ETVALAWTKA AILDCLGQAR QALERFAGET GDLSMMAFVV DNLHQVHGCL
RMLELRGATR LAEELELFAK ALADGQVSPR GDCLGALFRG LEQLPSYLER LRGARHDLPL
VMLPLLNQLR ACRGEEPLAQ ASLMTGAAQR FAGDDDLANL DLSLGNWRDQ LQAGSGRDAL
RSVVTALCDD LMRIKERLDQ YGRGDRQHSE QLDALLAPLR HVADTLAVLG FQQPRRVIID
QVLALQALAQ GERAVDDAVL MDVAGALLYV EASLNGMVGP LEESGQGSLP GSDLAEIRQL
VLHEALNVLQ QAKDLIGDYL ESDWPRQRLQ PLPGLLQQIR GALAMLMLPA VAELFVGCAS
YVQRWLQHLE EEPPVDELTH LAEALSAAEC YLQWRAADPL ADGQPFIEMA RASLAALGVQ
CAVVGASADL DGSGDGIDDE LREVFLDEAG ELLPEIERHW LRWRADNQQR EALGEVRRAL
HTLKGSGRMV HAEAVAELAW GAEHLLNRVL EGRSVLTPEG VVALQQVFVH LPDLLADFAA
GQLPQLTEIE QLAGHLHSLA ENDAPAAAGV DGLDPQLLGI FRTEAQGHLA SLEVYLQSAG
GQDTPVSDDL QRALHTLKGS AAMAGVMPVA ELATAFDRLA REYKGHQLPL QMAEMEWLEA
ARSLFHLGLA QLDSTPLAAI PGAAELIEQV GQAVDGRLAS LHEDSHHAGR SKRDPQLVAS
FLAQAMDILL DAETLLSRWQ QQPAQRDALD NLLDQMTTLG HAAHLADLWQ MDEVCEALLD
LYGAVEEGSL PADSRFFSQA QRAHEALLDM LDEVAAGQDI PPRPELVDSL RNLLDQALAP
DATGLVGIDT VTPLHPDMDL ADTLGLPHPP LQPQVAEPLA EAPESPGEEL LEVFLEESSD
IVESAAAALA RWQADPRSSV EVDNLMRDLH TLKGVARMVE ITPIGDLAHE LEFLYELLAA
GRLPPSAPLF ALLQNCHDRL AHMLDAVRLG QPLHAATALI DYIRNFSSAA LTDTAAGQGP
PEAATAEVPA AAPERAPGDM VKVDAELLDD LGNLAGEHSI IRGRIEQQVN DAQFALNEME
TTLERMRDQL LRLDVETQGR ISSRQQFEGD AYDDFDPLEM DRHSQLQQLS RALFESASDL
LDLKETLAQR AQEAYSLLQQ QARVNSQLQE GLTATLMVPF ERLVPRLQRV VRQVASELGK
QVELVVGNAE GELDRSVLER MVAPLEHMLR NAVDHGLESR AMRLAAGKPE QGTIHLNLLH
EGADIVIEMT DDGAGVPLEA VRRKAIKRGL LDPQAQLSDH EILQFILRPG FSTAEKITQI
SGRGLGMDVV HEEVKQLGGS MSIESAQGKG ARFLIRLPFT VSINRALMVH LGDEQYAIPL
NTIEGIVRVP PAELAACYQL DSPRYVYAGH EYELRYLGEL LQGLPRPALL GQSVPLPVLL
VHSKEQSFAI QADSLSPSRE IVVKSLGPQF AAVAGLSGAT LLGDGRVVLI LDLLGQLRGQ
QRRLARLPGG GSQRQLLGPA PRRALLVMVV DDSVTVRKVT SRLLERHGMS VLTAKDGVDA
MALLEEHRPD VLLLDIEMPR MDGFEVATRI RRDARLKDLP IIMITSRTGQ KHRDRAMAIG
VNEYLGKPYQ ESLLLQSIAH WSQAHA
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