Gene Pput_1251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1251 
SymboltolB 
ID5195525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1416022 
End bp1417293 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content61% 
IMG OID640585717 
Producttranslocation protein TolB 
Protein accessionYP_001266596 
Protein GI148546494 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0936092 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTGCT GCGTGGCAGG CATGGCGGTG GCAGAAGAAA AGAACATCCT GGTTACCAGC 
GGCAGCGACC GGGCCACGCC CATCGCGGTA GTACCGTTCG GTCTGCAGGG CGGCAGCGTG
CTGCCCGAAG ACATCGCCGA CATCATTGGC AATGACCTGC GCAACTCTGG CTACTACTCG
CCAATTCCGC GGCAGAACAT GATCAGCCAG CCGTCGCAGG CCAGCGAAGT GATCTTCCGT
GATTGGAAAG CGCTGGGTGC ACAGTACGTG ATGGTCGGCA GCATTGTGCC GTCGGGCGGT
CGCCTGCAGG TGCAGTACGC GCTGTTCAAC GTCGCCACCG AGCAGCAAGT GCTGACCGGC
AGCGTGGCGG GCAGCACCGA CCAGCTGCGC GACATGGCGC ACTACATTGC CGACCAGTCG
TTCGAGAAGC TCACCGGCAT CAAGGGCGCG TTCTCTACGC GCATGCTGTA CGTGACGGCC
GAGCGTTTCT CCACCAACAA CACCCGCTAC ACCCTCCAGC GTTCGGACTA CGACGGTGCG
CGTGCGGTGA CCCTGCTGCA ATCGCGTGAG CCGATCCTGT CGCCGCGCTT TGCGCCAGAT
GGCAAACGTA TCGCCTACGT TTCGTTCGAG CAGAAGCGCC CACGTATCTT CGTGCAGAAC
ATCGATACTG GCCGCCGCGA GCAGGTGACC AACTTCGAAG GCCTGAACGG TGCGCCAGCC
TGGTCGCCGG ACGGTTCGCG CCTGGCGTTC GTGCTGTCCA AGGACGGCAA CCCGGACATC
TACGTGATGA ACGTGGCCTC GCGCCAGATC AGCCGTGTTA CTGCAGGCCC GGGTATCAAT
ACCGAGCCGT TCTGGGGTAA AGATGGCAAC ACCCTCTACT TCACTTCCGA CCGTGGCGGC
AAACCGCAGA TCTATAAACA GTCGGTCAGT GGTGGTGGTG CCGAGCGCGT AACGTTCGTG
GGTAACTACA ACGCCAACCC GAAACTTTCG GCGGACGAAA AGACCCTGGT AATGATCCAT
CGCCAACAGG GCTTTACCAA CTTCAAAGTG GCGGCACAGG ACTTGCAGCG CGGAAGTGTA
AAGATTCTGT CTGAAACAAG TCTTGATGAG TCTCCCACTG TTGCGCCAAA CGGCACCATG
CTAATCTACG CCACCCGCCA GCAGGGCCGG GGAGTCTTGA TGCTCGTGTC GCTGAACGGC
CGCGTGAGGC TCCCACTTCC TACCGCTCAA GGCGAAGTCA GAGAACCGTC CTGGTCCCCT
TACCTGAACT GA
 
Protein sequence
MLCCVAGMAV AEEKNILVTS GSDRATPIAV VPFGLQGGSV LPEDIADIIG NDLRNSGYYS 
PIPRQNMISQ PSQASEVIFR DWKALGAQYV MVGSIVPSGG RLQVQYALFN VATEQQVLTG
SVAGSTDQLR DMAHYIADQS FEKLTGIKGA FSTRMLYVTA ERFSTNNTRY TLQRSDYDGA
RAVTLLQSRE PILSPRFAPD GKRIAYVSFE QKRPRIFVQN IDTGRREQVT NFEGLNGAPA
WSPDGSRLAF VLSKDGNPDI YVMNVASRQI SRVTAGPGIN TEPFWGKDGN TLYFTSDRGG
KPQIYKQSVS GGGAERVTFV GNYNANPKLS ADEKTLVMIH RQQGFTNFKV AAQDLQRGSV
KILSETSLDE SPTVAPNGTM LIYATRQQGR GVLMLVSLNG RVRLPLPTAQ GEVREPSWSP
YLN