| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3778 |
|---|
| Symbol | |
|---|
| ID | 6112742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4200450 |
|---|
| End bp | 4202009 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641623569 |
|---|
| Product | transcriptional regulator, TyrR |
|---|
| Protein accession | YP_001750629 |
|---|
| Protein GI | 170722941 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.18738 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000851143 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCA AAGTGCATTG CCAGAACCGC ATCGGCATCC TTCGGGACAT CCTCAACCTG
TTGGTGGAGT ACGGAATCAA CGTACTCCGT GGTGAAGTCG GCGGTGACCA TGGCAATGCC
ATCTACCTGC ATTGCCCGAA CCTCATCAAC CTGCAGTTCC AGGCTCTACG TCCGAAATTC
GAGTCGATTG CCGGGGTCTT CGGGGTCAAG CGTGTCGGCT TGATGCCCAG CGAGCGACGG
CACATGGAGC TCAACGCGCT GCTGGGGGCG CTGGATTTCC CGGTGCTGTC GGTCGACATG
GGCGGCAGCA TCGTCGCCGC CAACCGCACC GCCGCGCAGT TGCTGGGCGT GAGGGTCGAC
GAGGTGCCGG GCATCCCGTT GGCGCGCTAT GTAGAGGACT TTGACCTGCC GGAACTGGTG
CGGGCCAACA AATCTCGAAT CAATGGCCTA CGGGTCAAGG TCAAGGGTGA TATTTTCCTG
GCCGACATCG CACCTTTGCA GTCCGAGCAT GACGACAGCG AGGCATTGGC TGGCGCGGTG
TTGACCTTGC ACCGTGCCGA CCGCATCGGT GAGCGGATTT ACAACGTACG CAAACAGGAG
CTGCGCGGCT TCGACAGCAT CTTCCAGAGC TCGCGGGTGA TGGCGGCTGT GGTGCGTGAG
GCGCGGCGCA TGGCGCCGCT GGACGCGCCG CTGCTGATCG AAGGTGAGAC AGGTACAGGC
AAAGAGCTGT TGGCGCGTGC CTGCCACCTG GCCAGCCCGC GGGGGCAGGC GCCTTTGATG
GCCCTCAATT GTGCCGGCCT GCCAGAGTCC ATGGCGGAAA CCGAGCTGTT CGGTTATGGC
CCCGGCGCGT TCGAGGGGGC CCGCGCCGAA GGCAAACTGG GCCTTCTGGA GTTGACCGCT
GGCGGAACAC TGTTCCTCGA TGGGGTGGGG GAGATGAGCC CGCGTCTGCA GGTGAAGTTG
CTTCGCTTTC TGCAGGACGG CTGCTTCCGT CGCGTTGGCA GTGATGAAGA AGTTTACCTG
GATGTACGGG TGATCTGCGC AACCCAGGTG GACCTTTCCG AATTGTGCGC TCGGGGCGAA
TTCCGCCAGG ACCTGTACCA TCGCCTCAAT GTGTTGTCGT TGCACATACC GCCGTTGCGC
GAGTGCATGG ACGGCCTGGA AGGGTTGGTG CAGCACTTTC TCGATCAGGC CAGCCGGCAG
ATTGGTTGTG CCCTGCCGCG CCTGGCGCCT GCGGCGATGG ACAAACTGGC GCACTACCAT
TGGCCGGGCA ATGTCCGGCA ACTGGAAAAC GTATTGTTCC AGGCGGTATC GCTGTGCGAA
GGCGGAATAG TGAAAGGCGA ACATATCCGC TTGCCGGATT ACGGCGTGCG GCAGCCCTTG
GGTGAGTTTA CCCTTGAAGG TGATCTTTCG CAGATTATCG GGCGCTTCGA AAAGGCTGTA
CTGGAAAGTC TGATCGGGGA GTATCCAAGT AGCCGGGCGC TGGGCAAGCG GCTGGGTGTT
TCACATACAA CCATTGCTAA CAAGTTGCGG GATTATTCGC TGGGCAAATC GAATGAATGA
|
|---|
| Protein sequence | MRIKVHCQNR IGILRDILNL LVEYGINVLR GEVGGDHGNA IYLHCPNLIN LQFQALRPKF
ESIAGVFGVK RVGLMPSERR HMELNALLGA LDFPVLSVDM GGSIVAANRT AAQLLGVRVD
EVPGIPLARY VEDFDLPELV RANKSRINGL RVKVKGDIFL ADIAPLQSEH DDSEALAGAV
LTLHRADRIG ERIYNVRKQE LRGFDSIFQS SRVMAAVVRE ARRMAPLDAP LLIEGETGTG
KELLARACHL ASPRGQAPLM ALNCAGLPES MAETELFGYG PGAFEGARAE GKLGLLELTA
GGTLFLDGVG EMSPRLQVKL LRFLQDGCFR RVGSDEEVYL DVRVICATQV DLSELCARGE
FRQDLYHRLN VLSLHIPPLR ECMDGLEGLV QHFLDQASRQ IGCALPRLAP AAMDKLAHYH
WPGNVRQLEN VLFQAVSLCE GGIVKGEHIR LPDYGVRQPL GEFTLEGDLS QIIGRFEKAV
LESLIGEYPS SRALGKRLGV SHTTIANKLR DYSLGKSNE
|
|---|
| |