Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3005 |
Symbol | |
ID | 6111956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 3346705 |
End bp | 3348171 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641622792 |
Product | nickel ABC transporter, periplasmic nickel-binding protein |
Protein accession | YP_001749866 |
Protein GI | 170722178 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.441724 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTACTCAT GGCCTGTGAA TGCCGGGCCG CTCGACCCGC GTGGCTACTC CCCGAACCAG ATGTACGCCC AGGCCATGGT CTATGAGCCC CTGGTGCGCT ATACCGCCGC GGGTACGCTG GAGCCTTGGC TGGCTGAGGC CTGGCAGGTT TCCGATGACG GCAAGACCTA CACGTTCACG CTTCGTGACG GCGTGCGCTT CAGTGATGGC ACACCCTTCG ACGCGCCTGC GGCCAAAGCC AACCTCGACG CAGTGCTGGC CAACTCTCAG CGCCACCGCT GGATGGAGCT GGTGACCACC CTGGACCACG TTGAGGCACC TGAACGCCTG ACCCTGCGCC TGGTTCTCAA GCACCCCTAC TACCCGACGC TGATGGAACT GGCCCAAGTT CGCCCCTTAC GCTTTGCCTC GCCTCAGGCA AAACCCGGCC AACCCGCCGG GACCGGCCCG TGGATGCGCG CCGAATCGCG CCTGGGCGAA TACGACCGCT TCGTGCGCAA CCCTCATTAC TGGGGGCCAA AGCCGGCCTA CGGCGAGGTC ATGGTCAAGG TCATCCCAGA CCCCAACAGC CGCGCGCTGG CCCTGCAGGC CGGCGAAGTC GAGCTGATCC AGGGCGCCGC CGGCGAGATC ACTGCCAGCA CGTTCGTGCG CCTGCGTGAC CAGGGCTTTG CCACCGCACT GTCGGCACCG CTGGCCACCC GCACCCTGGC GATGAACACC GGCCGTGGCG CTACCCGTGA TCTGGCGGTA CGCCAGGCGA TCAACGAGGC GGTGGACAAG CAAGCCATCA TCGACAAGAT CCTCTACGGC CTTGAGCCCC GTGCAGATAC CCTGTTTGCC AGCAACATGC CCTACGCCGA TATCGGCCTC AAGCCCTACC CGTATGACCC TGTACTCGCC GCCAACTCCC TCGATGCTGC CGGGTGGGCG CTGGCGCCAG GCGCTTCAGT GCGCAGCAAA GGCGGCGAAC CATTGGCCAT CGAGTTGGTG TTCCTCGGCA CCAGCGCCTT GCAGAAGAGC CTGGCCGAAG TGCTGCAGGG CGAGCTGGCG AAAATCGGCA TCCGCATCGA CCTGCGTGCG GTTGAGGAAG GGGCGCTGGT GCGACGCCAG CGCGACGGCG ACTTCGGCAT GATCTTCGCC GACACTTGGG GTGCGCCCTA CGACCCGCAT TCGTTCGTCA GCTCCATGCG CTACGCCGGC CATGCCGACT ACATGGCCCA GCGTGGGTTG GCAATCAAGG ACGAACTGGA TAAGCGCATA GGCCAGGTGC TGGCCAGCAC GGATGAGCAA CAGCGTGCCG AGCAGTACCG CTTCATCCTC ACCACCCTGC ACGAACAGGC CGTCTACCTG CCCATCTCGC ATCTCACGGC CATCAGCGTG CGCCGAAACT CGGTGGCCAA GGTCCAGTTC GGCAGTACGT TGTTCGATGT GCCGTTCGAA ACCATGACAC CCAAACAGGA AGACTGA
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Protein sequence | MYSWPVNAGP LDPRGYSPNQ MYAQAMVYEP LVRYTAAGTL EPWLAEAWQV SDDGKTYTFT LRDGVRFSDG TPFDAPAAKA NLDAVLANSQ RHRWMELVTT LDHVEAPERL TLRLVLKHPY YPTLMELAQV RPLRFASPQA KPGQPAGTGP WMRAESRLGE YDRFVRNPHY WGPKPAYGEV MVKVIPDPNS RALALQAGEV ELIQGAAGEI TASTFVRLRD QGFATALSAP LATRTLAMNT GRGATRDLAV RQAINEAVDK QAIIDKILYG LEPRADTLFA SNMPYADIGL KPYPYDPVLA ANSLDAAGWA LAPGASVRSK GGEPLAIELV FLGTSALQKS LAEVLQGELA KIGIRIDLRA VEEGALVRRQ RDGDFGMIFA DTWGAPYDPH SFVSSMRYAG HADYMAQRGL AIKDELDKRI GQVLASTDEQ QRAEQYRFIL TTLHEQAVYL PISHLTAISV RRNSVAKVQF GSTLFDVPFE TMTPKQED
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