Gene PputGB1_1706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_1706 
Symbol 
ID5869486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1931206 
End bp1932387 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content61% 
IMG OID641546823 
Productresponse regulator receiver modulated serine phosphatase 
Protein accessionYP_001667945 
Protein GI167032714 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.000168842 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGAAAA CCAGTGCAAC GCTGCTGATC ATCGATGACG ACGACGTGGT CCGTGCGAGC 
CTCGCCGCCT ACCTTGAAGA CAGTGGCTTC AGCGTCCTCC AGGCCGGTAA TGGCCAGCAG
GGGCTTCAGG TCTTCGAAGA ACACCAGCCC GACCTCGTGA TCTGCGATCT GCGCATGCCG
CAGATGGGCG GCCTCGAACT GATCCGCCAG GTCAGCGAGC GGGCGCCGCA GTTGCCGGTG
ATCGTGGTTT CCGGTGCCGG CGTCATGAGC GATGCGGTGG AAGCGTTGCG CCTGGGCGCC
GCCGACTACC TGATCAAGCC GCTGGAAGAC TTGGCCGTGC TTGAGCATTC GGTACGTCGT
GCCCTCGACC GCTCGCGCCT GGTGCTGGAA AACCAGCGCT ACCGCGACAA GCTCGAAGCG
GCCAACCGCG AACTGGAGGC CAGCCTGCAC CTGCTGCAGG AAGACCAGAC CGCCGGTCGC
CAGGTGCAGA TGAACATGTT GCCAGAAAGC CCTTGGGTGG CCGGTGAGTT TGCGTTCGAG
CACCAGATCA TTCCGTCGCT GTACCTGTCG GGTGATTTTG TCGATTACTT CCGCGTGGAC
GAGCGGCGCA TTGCCTTCTA CCTCGCCGAT GTTTCCGGGC ATGGCGCATC GTCGGCCTTT
GTCACGGTGC TTTTGAAATT CATGACCACG CGGCTCATGT TCGAGCTCAG GCGCAGCAAG
ATGCGCGAGT TCAAGCCGTC GGAAGTGCTC AGTCACATCA ACCGCGGCCT GATCAATAGC
AAGCTGGGCA AGCACGTAAC CATGGTCGGT GGGGTGATCG ACGAAGAGTC TGGTCTGTTG
ACCTACGCCG TCGGCGGCCA CTTGCCGCTG CCCGTGCTGC ATACCCCCGA GCACACTCGC
TACCTGGAAG GCCGTGGCCT GCCGGTGGGG CTGTTCGATG AGGCCACCTA CCAGGACTTG
GTCGTGGAGC TGCCCCCGCA GTTCAGCCTC AGCCTGATGT CCGATGGCAT TCTGGACCTT
TTGCCGGGTG ATACGCTCAA AGATAAAGAA GCCGCCTTGC CGGAAATCGT CAAGGCAGCA
GGTGGCAGCC TGGATGGGCT GCGTCAACGA TTTGGATTGG CTACGCTTGG GGAGATGCCG
GATGATATCG CCCTATTGGT GTTGAGCAGG AACCTTCAAT GA
 
Protein sequence
MQKTSATLLI IDDDDVVRAS LAAYLEDSGF SVLQAGNGQQ GLQVFEEHQP DLVICDLRMP 
QMGGLELIRQ VSERAPQLPV IVVSGAGVMS DAVEALRLGA ADYLIKPLED LAVLEHSVRR
ALDRSRLVLE NQRYRDKLEA ANRELEASLH LLQEDQTAGR QVQMNMLPES PWVAGEFAFE
HQIIPSLYLS GDFVDYFRVD ERRIAFYLAD VSGHGASSAF VTVLLKFMTT RLMFELRRSK
MREFKPSEVL SHINRGLINS KLGKHVTMVG GVIDEESGLL TYAVGGHLPL PVLHTPEHTR
YLEGRGLPVG LFDEATYQDL VVELPPQFSL SLMSDGILDL LPGDTLKDKE AALPEIVKAA
GGSLDGLRQR FGLATLGEMP DDIALLVLSR NLQ