Gene Pnap_2743 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2743 
Symbol 
ID4688478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2887270 
End bp2887953 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content65% 
IMG OID639835751 
ProductHAD family hydrolase 
Protein accessionYP_982966 
Protein GI121605637 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.994994 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0511558 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCAT CACACCCTGC GCCCACCCAT TTCAAAGCCG TGATCTTCGA TTGCGACGGA 
ACGCTGGTTG ACAGCGAAAC CAGCGGCATG ACCGCGCTGT ACGAAGAAGC CTGCAAGCTC
GGTTATTCGC TGCCCCTGGC GCAGGCGCTG GACGGCTTTC GGGGCCGGCA AATGGCGCTG
TGCATCGAGA TGATCGAAGC CCATACCGGG CGGCCCGCGC CCGCCGGGTT CATGGCCACG
GTGCGCCTGG CCATGGCCGA CAAGTTCCGC ACCGGCATCA CGGCCATGCC CGGCGCGCCG
GAGTTGCTGC AAGCGTTGCG CCGGGCCGGG GTGCCCTACT GCATCGCGTC CAACGGGCCG
CAGGACAAGA TGGAACTGAC GCTGGGCCTG TCGGGCCTGC AGGGCTATTT TGAAAAGCAT
GTGTTCAGCG CCTACGAAGT GGGCCACTGG AAGCCGTCGC CCGAGCTGTT TTTTCACGCC
GCGCGCGAAA TGGGCGTTGA AGCGGGCGGC TGCGTGGTGG TCGAAGACAG CCTGCCGGGC
ATCGCCGCCG GGCTGGCAGC GGGCATGCGC GTGTATTCGA TGTGCGAGCC CGAAACCGTT
CCCGCCGACG TGGCCGCGCA AGTCGTGCAG ATCGGCGGCC TGGCCGACCT ACATGCTGCA
TTTAGCTTGA ACAGCGCTGT TTAA
 
Protein sequence
MTSSHPAPTH FKAVIFDCDG TLVDSETSGM TALYEEACKL GYSLPLAQAL DGFRGRQMAL 
CIEMIEAHTG RPAPAGFMAT VRLAMADKFR TGITAMPGAP ELLQALRRAG VPYCIASNGP
QDKMELTLGL SGLQGYFEKH VFSAYEVGHW KPSPELFFHA AREMGVEAGG CVVVEDSLPG
IAAGLAAGMR VYSMCEPETV PADVAAQVVQ IGGLADLHAA FSLNSAV