Gene Pnap_1126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1126 
Symbol 
ID4687745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1199248 
End bp1200600 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content65% 
IMG OID639834130 
ProductTolC family type I secretion outer membrane protein 
Protein accessionYP_981363 
Protein GI121604034 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC CTAGAAAACT GTCGGCGCCC CGCATGTCGA TGTTGTCCGT TTCGGCGGCA 
TTCACGCTGG CAGCGCTGGC GCCCCTGGCG CAAGCCCAGA GTCTGGTGGA GTTGTATGAA
TCGGCGCGGG CTTTTGATGC GACCTACCAG TCGGCCAAGC TGCAATACGA CGCCAACCTG
GCCCGCGCCG ACCAGGCCAG GGCCGGCATT TTGCCCACCG CCGGGCTGTC GGCCGGGGCC
TCGCGCGTTG GCGTTGACAC CACCACGACG CCTGCCGTCA ACACCAGCTT CAACACCCAG
AACGCCACGC TCAGCGCCAG CCAGCCTTTG TACCGGCCCG GCAACTGGGC CACCTACGAG
CAGGGCTTCA AGCAGGTGGA CCTGGCCCGA GCCCAGCTCG AATCGGCGTC GCAAGACCTG
ATCGTGCGCA CCAGCCAGGC TTACTTCGAC GTGCTGGCCG CGCAGGACAC GCTGGCTTTT
GTGCGGGCGC AAAAAGAAGC GGTGAACGAG CAGCTGGCGT TTGCCAAGCG CAATTTCGAG
GTCGGCACCT CCACCATCAC CGACACCCGC GAAGCCCAGG CGCGCTTTGA CCTGGTGACG
GCCCAGGAAA TCGCCGCCGA GAACGACTTG CGCGTCAAGA AGATTGCCCT TGACCAGCTC
GTCGGCATCA CCGAATCCCA GCCCCGGCCC CTGCTGGCTC CGGCCAGCCT GCCGCCCGTG
GTGCCGGCCG ACGTGGCGAC CTGGGTGCGG CAGTCCGAAC TGGTGAACCC CGCCATTCGC
CAGGCCCAGA GCAACGCAGA GATTGCCGAC CTGGAAATCA AAAAAGCCGA AGCCGGCCAC
AAGCCGACAC TGGACGTGAC CGCCAGCTAC AACGTCACCA AAAACCCGTC CAACACGGCG
CAGGCCGGCA TTTCCTCGCG CGCCAACACC AGCAACATCG GCCTGCTGCT CAATGTGCCG
CTGTTCGCCG GCTTCTCGAC GCAAAACCGC ATCCGCGAAA CGCTGTCGCT GCGCGACAAG
GCGCTGAGCG ACCTCGAAGG CACGCGGCGC AGCGTGGCGC AAAACGTGCG CACCGCCTAC
TTCGGCGTGC AGTCGGGCCA GGGACAGGTC AAGGCGCTGG AAGCGGCCGA GCTGTCCAGC
CAGAGCGCGC TCGACGCCAA CAAGCTGGGC TACCAGGTCG GCGTGCGCAT CAACATCGAC
GTGCTGAACG CCCAAAGCCA GCTGTTCCAG ACCAAGCGCG ACCTGGCGCA GGCGCGCTAC
AACGTACTGC TGGGCGGGCT GCGGTTAAGG CAGGCCAGCG GCACGTTGAC AGCTGAGGAT
TTGCAGCAGG TGAATGGGTT GCTGGCGAGG TAG
 
Protein sequence
MNLPRKLSAP RMSMLSVSAA FTLAALAPLA QAQSLVELYE SARAFDATYQ SAKLQYDANL 
ARADQARAGI LPTAGLSAGA SRVGVDTTTT PAVNTSFNTQ NATLSASQPL YRPGNWATYE
QGFKQVDLAR AQLESASQDL IVRTSQAYFD VLAAQDTLAF VRAQKEAVNE QLAFAKRNFE
VGTSTITDTR EAQARFDLVT AQEIAAENDL RVKKIALDQL VGITESQPRP LLAPASLPPV
VPADVATWVR QSELVNPAIR QAQSNAEIAD LEIKKAEAGH KPTLDVTASY NVTKNPSNTA
QAGISSRANT SNIGLLLNVP LFAGFSTQNR IRETLSLRDK ALSDLEGTRR SVAQNVRTAY
FGVQSGQGQV KALEAAELSS QSALDANKLG YQVGVRINID VLNAQSQLFQ TKRDLAQARY
NVLLGGLRLR QASGTLTAED LQQVNGLLAR