Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1126 |
Symbol | |
ID | 4687745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 1199248 |
End bp | 1200600 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639834130 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_981363 |
Protein GI | 121604034 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGC CTAGAAAACT GTCGGCGCCC CGCATGTCGA TGTTGTCCGT TTCGGCGGCA TTCACGCTGG CAGCGCTGGC GCCCCTGGCG CAAGCCCAGA GTCTGGTGGA GTTGTATGAA TCGGCGCGGG CTTTTGATGC GACCTACCAG TCGGCCAAGC TGCAATACGA CGCCAACCTG GCCCGCGCCG ACCAGGCCAG GGCCGGCATT TTGCCCACCG CCGGGCTGTC GGCCGGGGCC TCGCGCGTTG GCGTTGACAC CACCACGACG CCTGCCGTCA ACACCAGCTT CAACACCCAG AACGCCACGC TCAGCGCCAG CCAGCCTTTG TACCGGCCCG GCAACTGGGC CACCTACGAG CAGGGCTTCA AGCAGGTGGA CCTGGCCCGA GCCCAGCTCG AATCGGCGTC GCAAGACCTG ATCGTGCGCA CCAGCCAGGC TTACTTCGAC GTGCTGGCCG CGCAGGACAC GCTGGCTTTT GTGCGGGCGC AAAAAGAAGC GGTGAACGAG CAGCTGGCGT TTGCCAAGCG CAATTTCGAG GTCGGCACCT CCACCATCAC CGACACCCGC GAAGCCCAGG CGCGCTTTGA CCTGGTGACG GCCCAGGAAA TCGCCGCCGA GAACGACTTG CGCGTCAAGA AGATTGCCCT TGACCAGCTC GTCGGCATCA CCGAATCCCA GCCCCGGCCC CTGCTGGCTC CGGCCAGCCT GCCGCCCGTG GTGCCGGCCG ACGTGGCGAC CTGGGTGCGG CAGTCCGAAC TGGTGAACCC CGCCATTCGC CAGGCCCAGA GCAACGCAGA GATTGCCGAC CTGGAAATCA AAAAAGCCGA AGCCGGCCAC AAGCCGACAC TGGACGTGAC CGCCAGCTAC AACGTCACCA AAAACCCGTC CAACACGGCG CAGGCCGGCA TTTCCTCGCG CGCCAACACC AGCAACATCG GCCTGCTGCT CAATGTGCCG CTGTTCGCCG GCTTCTCGAC GCAAAACCGC ATCCGCGAAA CGCTGTCGCT GCGCGACAAG GCGCTGAGCG ACCTCGAAGG CACGCGGCGC AGCGTGGCGC AAAACGTGCG CACCGCCTAC TTCGGCGTGC AGTCGGGCCA GGGACAGGTC AAGGCGCTGG AAGCGGCCGA GCTGTCCAGC CAGAGCGCGC TCGACGCCAA CAAGCTGGGC TACCAGGTCG GCGTGCGCAT CAACATCGAC GTGCTGAACG CCCAAAGCCA GCTGTTCCAG ACCAAGCGCG ACCTGGCGCA GGCGCGCTAC AACGTACTGC TGGGCGGGCT GCGGTTAAGG CAGGCCAGCG GCACGTTGAC AGCTGAGGAT TTGCAGCAGG TGAATGGGTT GCTGGCGAGG TAG
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Protein sequence | MNLPRKLSAP RMSMLSVSAA FTLAALAPLA QAQSLVELYE SARAFDATYQ SAKLQYDANL ARADQARAGI LPTAGLSAGA SRVGVDTTTT PAVNTSFNTQ NATLSASQPL YRPGNWATYE QGFKQVDLAR AQLESASQDL IVRTSQAYFD VLAAQDTLAF VRAQKEAVNE QLAFAKRNFE VGTSTITDTR EAQARFDLVT AQEIAAENDL RVKKIALDQL VGITESQPRP LLAPASLPPV VPADVATWVR QSELVNPAIR QAQSNAEIAD LEIKKAEAGH KPTLDVTASY NVTKNPSNTA QAGISSRANT SNIGLLLNVP LFAGFSTQNR IRETLSLRDK ALSDLEGTRR SVAQNVRTAY FGVQSGQGQV KALEAAELSS QSALDANKLG YQVGVRINID VLNAQSQLFQ TKRDLAQARY NVLLGGLRLR QASGTLTAED LQQVNGLLAR
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